Sphingobacterium sp. B29: BV902_18300
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Entry
BV902_18300 CDS
T04670
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphn
Sphingobacterium sp. B29
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphn03016
]
BV902_18300
Enzymes [BR:
sphn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BV902_18300
Transfer RNA biogenesis [BR:
sphn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BV902_18300
Prokaryotic type
tRNA splicing ligases
BV902_18300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APU98048
LinkDB
All DBs
Position
complement(4256682..4258073)
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AA seq
463 aa
AA seq
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MGSKLAGKDLVKIGFPQNNIVNTALGLITRYRKKENKENILLELTELIEAPERFMGHKIW
GKVSEGLVKPVEVRMQELHSHCAPFSIFGENEIDEQAKRQLYDALRLPISRQGALMPDAH
TGYGLPIGGVLATENAVIPYGVGVDIGCRMSLSIFDLPGSYFKGREFQLKNILKENTKFG
LNDTHRDKHDHVVFSRTEFQEIPLLKSLLGKAYRQFGTSGSGNHFVELGIVELQTVREEW
GINPGQYLGILSHSGSRGLGANIAKHYTSLAAQQCPLPRHVQHLAWLDLAGQEGQEYWMA
MNLAGEYAQACHADIHRRLAKALGGNPVVTIENHHNFAWKEFVNGEECIVHRKGATPAGK
GVLGVIPGSMTAPGFIVEGTGNPLSLQSASHGAGRVMSRSACKNNLTKSAMLKDLDAHGV
ELIGGALDESPRAYKDIHRVMKLQQELVTVLGTFSPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtaaattagcgggaaaagatctagtaaaaataggttttccacaaaataatata
gttaatacagctttagggctgatcacaaggtatcgaaagaaggaaaataaagaaaacatt
cttcttgaacttactgaattgatagaagctccggagcgatttatggggcataaaatatgg
ggaaaggtctctgaaggacttgttaaacctgttgaagtacgcatgcaggagcttcattca
cattgtgctccatttagcatatttggtgaaaatgaaattgatgagcaggcaaaaagacag
ttgtatgatgcactgagattgcctatttcaaggcaaggtgcactgatgccggatgcacat
acagggtacggacttcccatcggcggagtactggccacagaaaatgccgttataccgtat
ggtgtaggcgtagatattggttgtcggatgagcctgtcgatattcgatttaccaggcagt
tatttcaaaggaagggaattccaactgaaaaatatattgaaggaaaataccaaatttggt
ttaaatgacacacatcgtgataagcatgaccatgttgttttcagtagaactgaatttcag
gaaatcccactattaaaatccctgttgggtaaagcttacagacaatttgggacttctggt
agtggaaatcactttgtcgaattgggcattgttgagcttcaaaccgtgcgggaggaatgg
gggataaatccaggacagtacttggggattttatcccatagtggctctcgaggtttgggg
gcgaatatcgctaagcattacacaagtcttgcagcacaacaatgtccattaccgcgtcat
gtccaacatttggcctggttagatttagcaggccaagaaggacaagaatactggatggca
atgaatttggctggagagtatgcccaggcctgtcatgcagacatccaccgacgtttggcg
aaagcacttggcggtaatcccgtggtaacgatcgaaaatcatcataatttcgcatggaag
gaatttgtgaatggggaggaatgcatcgttcatcggaagggagcaacacctgcaggcaag
ggcgtgctgggggtgattcccggctcgatgacagcaccagggttcattgtggagggaacg
ggaaaccccttaagtttacagtctgcttcccatggagcggggcgtgtcatgtcgagatct
gcctgcaaaaataatttgacaaaaagcgctatgctgaaagatctggatgcacatggtgtg
gaattgattggcggcgcattggatgaatcaccccgtgcatataaagatattcatcgggtg
atgaaattacagcaggagttggtaactgttctcggaacgttcagtccgaagattgtacgt
atggacaaataa
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