Sphingobacterium sp. B29: BV902_23215
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Entry
BV902_23215 CDS
T04670
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphn
Sphingobacterium sp. B29
Pathway
sphn03420
Nucleotide excision repair
sphn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BV902_23215
03430 Mismatch repair
BV902_23215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphn03400
]
BV902_23215
Enzymes [BR:
sphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV902_23215
DNA repair and recombination proteins [BR:
sphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BV902_23215
MMR (mismatch excision repair)
Other MMR factors
BV902_23215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
AAA_11
YecM
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
APU98879
LinkDB
All DBs
Position
complement(5409093..5411372)
Genome browser
AA seq
759 aa
AA seq
DB search
MDYLAGLNPSQRGAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTN
KAAKEMRARIVSVVGSEAKNIWMGTFHSVFAKILRVEAELIGYPRNFTIYDTDDTKSLLR
AILKEMNLDDKLYNVNHVYGRISQAKNNLISPQEYNKNEAILAEDISNGRGQLGQIYMTY
AQRCYRAGAMDFDDLLFKTNVLLNKHPEVLHKYQHQFRYLMVDEYQDTNFSQYLIVKRLA
AVNENICVVGDDAQSIYAFRGANIQNILNFQKDYPDVKIFKLEQNYRSTKMIVNAANSVI
ANNQNQLEKNVFSDNEEGEKIKVSRAFSDNEEGKIVADQIIEEKSLKGLNYKDFAILYRT
NAQSRAMEEALRKINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRR
GIGDTTIEKIMIAADQNQYRIWDVVANAAQFLDGRSATSVGGFAQMIQSFQALAKNNNAF
DTAMHIAQHCGILKELYEDKSVEGLARYENIQELLNGIKEFSEREDIEERGLDVYMQDIA
LLTNDDNDKDPNADTVSLMTIHSSKGLEFPIVFIVGLEENLFPSQLSLNSRSELEEERRL
FYVAVTRAEKKLLLSYATSRYRWGTLNNCEPSRFLDELNPACLALDFKPRQTSASAGSFQ
GERIAWQQKDSDDTFSKPKPKPMVKTTSILPKAHKPTAGFAPSDTSNLQVGMEVEHERFG
FGKVVNLEGNKGDIKATIFFKELGQKQLLLKFAKLRIIQ
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttggattatttagcgggtttaaacccttcacaacgaggagccgtagagcaaacagaaggt
cctgtgatgattgttgcaggagctggttcaggaaaaacacgggtaattacctatcgtgta
gcacacttgattcgaaaaggtgttgatccattcaatatcttggtattaacatttaccaac
aaggctgccaaagagatgcgcgcacgtatcgtttctgttgttggaagcgaagcgaaaaat
atttggatgggaacattccactcggtattcgcaaagatactccgtgtcgaagcagaattg
atcggttatcccagaaactttaccatctacgatacggacgataccaaaagtttgttgcgt
gccattttaaaggaaatgaatctcgatgataagctgtataatgtcaatcatgtgtatgga
cgtatctcacaggcaaaaaacaacttgatctcaccgcaggaatataataagaatgaagcc
atactggccgaagatatttccaatggtcgtggtcaattggggcagatttatatgacctat
gcacaacgctgttaccgtgctggagcaatggattttgatgacctcttgtttaaaacaaat
gtcttgttaaacaagcatccagaggtattgcataaatatcagcatcaatttcgctatctg
atggtcgatgagtaccaggataccaacttctcccaataccttattgtcaaacgcctggca
gcagtcaacgaaaatatctgcgtggttggggatgatgcacaatcgatctatgcatttcgt
ggtgcaaatattcagaatatcctgaatttccaaaaggattatcctgatgtgaagatcttt
aaactggagcagaattatcgatcgactaagatgatcgtaaatgcggccaattcggtgatt
gcgaataatcagaatcaattggaaaaaaatgttttctcggataatgaagagggcgaaaag
atcaaggtttcacgtgctttctctgacaatgaggaaggtaagatcgttgctgaccagatt
atcgaagagaaatcgttaaaaggacttaattataaagattttgctattctgtatcgtacc
aacgcccaatccagggcaatggaggaggccttgcgcaaaattaatatcccctataaaata
tacggtggtacttctttctatcaacggaaagaaattaaagatctgatcgcgtatttcaga
ctcaccttcaacccaaatgatgaggaagcactaaagcgtgttatcaattatccacgtaga
gggataggggatacgacgatagagaagatcatgatcgctgcagatcagaatcaataccgt
atatgggatgttgttgcaaatgcagcccagtttctagacggacgcagtgcaacttctgtc
ggtggttttgcacagatgatacagagttttcaggctcttgccaaaaacaataacgcattt
gatacggcaatgcatattgcgcagcactgtggtattctgaaagaattgtatgaagacaaa
tcggtagaggggctggcgcgttacgaaaatatccaggaactcctcaatggtatcaaggaa
ttttcggaacgggaagatatcgaagagcgtggacttgatgtctatatgcaggatatcgcc
ctgttgacaaacgacgataatgataaagatccaaatgctgatactgtatcattgatgacc
atccactcttccaaaggattggaatttccgattgttttcattgtaggcttagaagaaaac
ctatttccttcccagttgtcgttgaattccaggtcggaattggaagaggaacgaagactt
ttttatgtcgctgttacgagagctgaaaaaaaattactactttcgtatgctacttcgcga
tatcgttggggaacgctgaataactgcgaacccagtcgcttcttggatgaattgaatccg
gcatgtcttgcattggattttaaaccacgacaaacttctgcctcagccggaagttttcaa
ggcgaacgaattgcatggcaacaaaaggatagtgatgatacgttttctaaacctaagcct
aagccgatggttaaaacgacatcaatactaccgaaagcccacaaacctactgcgggtttt
gctccttcagatacatcaaatcttcaagtcggcatggaagttgaacatgaacgttttgga
tttggtaaagttgttaatctcgaaggaaacaaaggagatataaaagcaactattttcttt
aaagagttgggacagaaacaattgttgcttaaatttgcaaaacttagaataattcaataa
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