Sphingobacterium sp. B29: BV902_26980
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Entry
BV902_26980 CDS
T04670
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphn
Sphingobacterium sp. B29
Pathway
sphn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BV902_26980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphn03400
]
BV902_26980
Enzymes [BR:
sphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV902_26980
DNA repair and recombination proteins [BR:
sphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BV902_26980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SUB1_ProdP9
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APU99518
LinkDB
All DBs
Position
6339474..6342809
Genome browser
AA seq
1111 aa
AA seq
DB search
MGIQEILEKYSQSESVQSLTKAIQSKNPKIQLKGLIGSSDAFIAVSSYNLQERPMVFILP
THEDASYFLSDLESLLDKQVLFFPSSYRKAFDFTQTDSANVLQRAETLSSLNHTSELPKM
VVTYPEAIAEKVINRNDLDKNTLEITENTALSIDFINEFLIEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGDDIESIRTFDIESQLSVKKIHKVTIVPNVQAKFLTSQHI
SLLEYVDQDATIWIKDAQFTLDIVKDGLKKAEKLWAGLTDKQKKDNPEWHNPAYEFTDEK
NLNALFFEFPIIEFGKQFFYKAEVTLKFDIHPQPSFNKDFNLLIHNFKENEGQRIQNLIF
SDSTKQVERIYTILEDLDKSATFIPIHKALREGFRDDSLKFACYTDHQIFDRYYKYKRKK
AYERSQAITLKDLRDLKPGDFITHIDHGVGRYGGLEKVDVNGKSQEMIRLIYADNDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIMLYAKRKAQHGN
AFSPDSYLQNELEASFIYEDTPDQEKATADVKKDMESPHPMDRLICGDVGFGKTEVAIRA
AFKAVADSKQVAVLVPTTILALQHYRTFSERLKGLPCTIDYINRFKTSKQIKDTLARLAE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVAVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNETLIGEAVSYELDRGGQVFFIHNRVAD
LPQLGNLIRKLVPGARVGVAHGQLEGDELEDVMLKFINHDFDVLIATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTPEAYKRLSAIEEFSELGS
GFNVAMRDLDIRGSGNLLGGEQSGFIAEIGFEMYHKILDEAIQELKEDEFSAVFADEKER
KYVSFTQIDTDLEVLIPDEYVTNITERYNLYTELSKLENEQQLAAFEKELEDRFGPIPRE
VFELFNTLRLQWFGKTIGFEKIAYKKHTLKGYFVNNPKSSYFESDQFGRVLSFVQSHPEI
SNLKEVKGQLRLALNNVNTIGYALSLLREML
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgggaattcaagaaatattagaaaaatacagccaaagcgaatctgtccagtcgctcacc
aaggctatacaatccaaaaacccaaagattcagctgaaagggcttattggatcttcggat
gcgttcatagccgtatcttcttacaacttacaggaacgtccaatggtctttattttacca
actcatgaagacgcttcttattttttaagtgatctggaaagcctgttggataagcaggtt
ctttttttcccttcgtcttatcgcaaagcttttgattttacacaaactgactctgccaat
gtattgcaacgtgcggagactttaagttcactcaaccatacttcggaattaccgaaaatg
gttgtgacttatccggaggctattgctgagaaagtgatcaaccgcaacgatctggataaa
aatacgttggaaataacagaaaacaccgctctaagtattgatttcatcaacgaatttttg
atcgaatatgatttcgaacgtgtagactttgtgtatgaaccggggcaatttgcgatacgc
ggtggcattgtagatatcttctctttttcgaatgacctcccataccgtattgaattcttt
ggcgatgacatcgaaagcatacgtacatttgacattgagtcccagctgtctgtcaaaaaa
atccacaaagtaaccattgtaccgaatgtccaagcgaaattcctgacatcccaacacatt
tccttattggaatatgtagatcaggacgctacgatctggatcaaagacgctcaatttacg
ttagatattgtaaaagatgggttaaaaaaagcggaaaaattatgggcggggctaacagat
aagcagaaaaaggataatcccgaatggcataatccagcctatgagtttacagatgagaag
aatctcaatgccttattctttgagttccctatcatcgaattcggcaaacagttcttttat
aaagctgaggtaacactcaagttcgatatccacccgcaaccttcgttcaataaggatttt
aatctcttaatccataatttcaaggagaatgagggccagcggatccagaatctgatcttt
tcagattcaaccaaacaggtcgaacgtatctatacgattctagaagatctcgataaatca
gcgacctttattccaattcataaagctttacgcgaaggttttagagacgacagtttaaag
tttgcttgttatactgatcaccaaatatttgaccgctattataaatataaacgcaagaag
gcttacgagcgctcgcaggcaattacgctcaaagatttacgggatcttaaacctggtgac
ttcattacccatattgaccacggtgtcggccgctacggtggtttggaaaaagtggacgtc
aacggtaaatctcaggaaatgatccgcctgatctatgcagacaacgatcttttgtatgtg
aacatcaactccttaaaccgtatctccaaatattccggaaaagagggtactgttcccaaa
atgaataaactgggtaccgacgcctgggacaaactcaaaaagacgaccaagaaaaaagtt
aaggatattgcgcgcgacctgatcatgctttatgccaaacgaaaggcccagcatggaaat
gcgttctcaccggatagctacttacagaatgaactggaggcctcctttatctatgaggat
acacctgatcaggaaaaggctactgccgatgtaaaaaaggatatggaatcgccgcatccg
atggaccgattgatctgtggggatgttggcttcggaaaaacggaggttgccatccgtgca
gccttcaaagctgtagcagacagtaaacaagttgctgtcctggtaccgacgacaattctt
gcattacagcactaccggacattttcggagcgcctaaagggccttccatgcacgatcgac
tatattaatcgtttcaaaacgagcaaacagatcaaagataccttagccaggctcgctgaa
ggaaaaatagacattatcattggcacccatcgccttgttagcaaagatgtcaagttcaaa
gatcttggtctaatgatcattgatgaggaacaaaagtttggggttgcagtaaaggaaaaa
ttgaaggtcatgcgtgcgaatgtagactcactgacattgacagcaacgccaattccaaga
acattgcacttttcattgatgggcgcccgcgatctgagtatcatctcgaccccaccaccc
aaccggcagcctgtacagaccgaactccacgttttcaatgaaacactgatcggagaggcc
gtcagttacgaacttgatcgtggtggacaggtattctttatccataatcgggtcgcagat
cttccgcagctgggcaatttgattcgcaagctggttccaggagcacgggtcggtgttgca
catggccaattggagggtgatgagcttgaggatgtgatgcttaagtttatcaatcacgat
ttcgatgtcttaatcgcaacaacaattattgaagcgggtcttgatattccaaacgcgaat
acgattattattaatcatgcacatatgttcggactgagtgacctgcaccaaatgcggggt
cgggtcggtcgctctaataaaaaggccttctgttatctactgagtccaccattgtcgact
ttaacaccggaagcctataaacgactttctgcgatagaagaattctctgaactcggctct
ggatttaatgttgccatgcgcgatttggatatacgtggctcgggaaacctattaggtggc
gaacagtcgggatttattgccgagatcggtttcgagatgtatcataaaatcttggacgaa
gctattcaggaactgaaagaggatgagttttcagcagtattcgctgatgagaaagaacga
aaatatgtgtcctttacacagattgacaccgacctcgaggtattgatcccggatgaatat
gtaaccaatatcactgaacgatataatctgtatacggaactctctaaattggaaaacgag
cagcaattggcagcgtttgaaaaagaacttgaagatcgctttggccctatcccacgagaa
gtctttgaattattcaatacactccgtttacagtggtttggcaaaacgatcggattcgaa
aaaatagcctataaaaagcatacactgaaaggttattttgtcaataaccccaagtcgagc
tactttgaatctgatcaattcggccgagtactgtcctttgtacaaagccatccggagatc
agcaacctcaaagaagtcaaaggccagcttcgtttagcattaaacaatgtgaataccatt
ggatatgcattgagcctgctgagagaaatgttgtaa
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