Sphingopyxis sp. MG: C3E99_02105
Help
Entry
C3E99_02105 CDS
T05382
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spho
Sphingopyxis sp. MG
Pathway
spho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3E99_02105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spho03019
]
C3E99_02105
03009 Ribosome biogenesis [BR:
spho03009
]
C3E99_02105
Enzymes [BR:
spho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3E99_02105
Messenger RNA biogenesis [BR:
spho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3E99_02105
Ribosome biogenesis [BR:
spho03009
]
Prokaryotic type
rRNA helicases
C3E99_02105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AVA12802
UniProt:
A0A2L0VLL5
LinkDB
All DBs
Position
complement(467655..469412)
Genome browser
AA seq
585 aa
AA seq
DB search
MAFDHLPPALADALGARDYQTLTPVQSQVIEAGAHGRDLLVSAQTGSGKTVAFGLAMADE
LLADGRLPFASAPLALIVAPTRELALQVSRELGWLYAATGARIATCVGGMDASRERRALN
QGVHIVVGTPGRLRDHLERGALDLAALRVAVLDEADEMLDMGFREDLEEILDATPETRRT
LLFSATIPKPIAQLAKRYQRDALRISTVGEDRGHGDIAYQVVTVAPADIESAVINLLRLH
DAETAMLFCATRENVRRLHARLVNRGFAAVALSGEHSQNERNQALQALRDRRARVCVATD
VAARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVDAMLRG
ARIDAEWTGAPTADDVRARDRERLIEALLAPIEHDEEDIELGRRLLAERAPEDIAAALVR
AHRATMPLPEELIDNGPPPRRERGERAEREPRERGGHRDGFDDSVWFRLNIGRRHNADPR
WILPLLCRRGHVTKHEIGAIRIGPNETLFNIPLAIADRFAEAVERSANKDGEDDNGVAIT
PAPGGATWPPRREGGPRKDGPRKPHGKPGGFKAKPFGKGKPRAPR
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggccttcgatcatcttccccccgccctcgcggacgctctcggcgcgcgcgattatcag
acgctgaccccggtgcaatcgcaggtcatcgaggccggggcccacggccgcgacctgctc
gtttcggcgcagacgggttcgggcaagacggtcgccttcggtcttgcgatggccgacgaa
ctgctggcggacggccgccttcccttcgcctcggcaccgcttgcgctgatcgtcgcgccg
acgcgcgaactggccctgcaggtcagccgcgaactgggctggctctatgccgccaccggc
gcgcgcatcgcgacctgcgtcggggggatggacgcgagccgcgagcgccgggcgctgaat
cagggcgtgcacatcgtcgtcggaacgcccggccgattgcgcgaccatctcgagcgcggc
gcgctcgacctcgccgcgttgcgcgtcgcggtgctcgacgaggccgacgaaatgctcgac
atgggctttcgcgaggatctggaggaaatcctcgacgcgacgcccgaaacgcggcgcacg
ctgctgttctcggcgacgatccccaagccgatcgcccagctcgccaaacgctatcagcgc
gatgcacttcgcatctcgacggtcggcgaggatcgcggccacggcgatatcgcctatcag
gtcgtgaccgtcgcgcccgccgatatcgaaagcgcggtgatcaacctgctgcgccttcac
gacgccgaaaccgcgatgctgttctgcgccacgcgcgaaaatgttcgccgcctgcacgcg
cggctggtcaaccgcggcttcgccgccgtcgcgctgtcgggcgagcatagccagaacgag
cgcaaccaggcgctgcaggcgctgcgcgaccgccgggcccgggtgtgcgtcgcgaccgac
gtcgcggcgcgcggcatcgatctgcccagcctgagcctggtcgtccatgtcgaaatcccg
cgcgatgccgaaacgctccagcaccgttcgggtcgcaccgggcgcgcggggaagaagggg
acggcggtgctgatcgtgccctatccgcgccgccgccgtgtcgacgccatgctgcgcggc
gcccggatcgacgccgaatggaccggcgccccgaccgccgacgacgtacgggcacgcgac
cgcgaacggctgatcgaggcgctgctcgcccccatcgagcatgacgaggaggatatcgag
ctcggccgccgcctgctcgccgagcgcgcgccggaggacatcgccgccgcgcttgtccgc
gcgcaccgcgccaccatgccgctgcccgaggaactgatcgacaacggcccgccgccgcgc
cgcgagcggggcgaacgcgccgaacgcgaaccgcgcgagcgcggcgggcaccgcgacggt
ttcgacgacagcgtctggttccggctcaacatcggtcgccgccacaatgccgacccacgc
tggatattgccgctgctctgccgccgcggccatgtcaccaagcacgaaatcggcgcgatc
cgcatcggcccgaacgaaacgctgttcaacattccgctcgccatcgccgaccgcttcgcc
gaggcggtcgagcgcagcgccaacaaggatggcgaagacgacaatggcgtcgcgatcacg
ccggcgcccggcggcgcgacctggccgccgcgacgcgaagggggtccgcgcaaggacggg
ccgcgcaagccccatggcaagcccggcgggttcaaggccaagcccttcggcaagggcaag
ccgcgcgcgccccgctga
DBGET
integrated database retrieval system
