Sphingopyxis sp. MG: C3E99_09075
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Entry
C3E99_09075 CDS
T05382
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spho
Sphingopyxis sp. MG
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spho03032
]
C3E99_09075 (topA)
03400 DNA repair and recombination proteins [BR:
spho03400
]
C3E99_09075 (topA)
Enzymes [BR:
spho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C3E99_09075 (topA)
DNA replication proteins [BR:
spho03032
]
Prokaryotic type
DNA Topoisomerases
C3E99_09075 (topA)
DNA repair and recombination proteins [BR:
spho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C3E99_09075 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Motif
Other DBs
NCBI-ProteinID:
AVA13971
UniProt:
A0A2L0VPX7
LinkDB
All DBs
Position
complement(1944878..1947421)
Genome browser
AA seq
847 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGRDFKVLASYGHVRDLPPKDGSVDPDDGFAMQWQLYPDKAK
RLKEIQDAAKQADRLILATDPDREGEAISWHVQELLRSKKALPQAVERVTFNAITKQAVT
DAMAHPRDLDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIEAFVTQQYWSVTGLFEMGGTPFRARLARWRGDKIERLSITTEADARAAEADVKAGHF
TVDAVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRVAQDLYEDGAITYMRTDGVQ
MDGSAISAARRAIADRYDGGYVPDKPRQYQTKAKNAQEAHEAIRPTDFGRDRVGGGDHAR
LYELIWKRALASQMASARLERTSVDLSDGTGKTMLRATGQVVKFPGFLALYDEGRDDNSD
DEDGRLLPAMDKGDAPAKTGVEVESHETQPPPRYSEASLVKKMEELGIGRPSTYASILQV
LKDRAYVRIEKNRFIPEESGRLLTAFLERFFARYVGYDFTAGLEEELDDVSGGRAQWQAV
LDRFWRDFKPRTGEVMEQKPSEITAALDEFLGAYLFPDKGDGSDPRLCPNCGTGRLALRG
GRFGPFIACSNYPECKYTRKFAQPGGADNGADNGPEAMGTDPDSGLEVTKRSGRFGPYIQ
LGEGKEAKRSSIPKDIPAEDFDLDYALRLLSLPREVGMHPESGKPIVAGLGRYGPYLLHD
GKYAKLTGTAEIFEIGMNAAVARIADAANGGGRGARAKAEPLKTFGPHPTSGGEMKLMAG
RFGPYVTDGTTNATLPKTVEPDALTVEEAVALIDARAAKGPAKGKKKAAPKKKAPAKKAP
AKKKAKE
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggtaattgtcgaatcgcctgccaaggcgaagacgatcgagaaatatctcggc
cgtgatttcaaggtgctcgcatcctacggccatgtccgcgacctgccgcccaaggacggt
tcggtcgatccggacgacggcttcgcgatgcagtggcagctctatcccgacaaggcgaag
cggctgaaggagattcaggacgcggcgaagcaggccgaccgcctgatcctcgcgaccgac
cccgatcgcgagggcgaggcgatcagctggcatgtgcaggaattgctgcgcagcaaaaag
gcgctgccgcaggcggtcgaacgcgtcaccttcaacgcgatcaccaagcaggcggtgacc
gatgcgatggcgcatccgcgcgacctcgacaccgatttgatcgatgcctatcgcgcgcgg
cgcgcgctcgactatctggtcggtttcaccctgtctccggtgctgtggcgcaagctgccc
ggcgccaagtcggctggccgtgtccagtcggtcgcgctgcggctggtggtcgagcgcgag
cgcgagatcgaggcgttcgtcacgcagcaatattggtcggtgaccgggctgttcgaaatg
ggcggcacaccgttcagggcgcgcctcgcgcgctggcgcggcgacaagatcgagcggctg
tcgatcacgacagaggctgatgcgcgcgccgccgaggccgatgtgaaggcgggccatttc
accgtcgatgcggtcgagaccaagccgctgacccgcaacccgccgccgcccttcaccacc
tcgacgctccagcaggaggcggcgcgcaagctcggcttttccgccagccacacgatgcgc
gtcgcgcaggacctctacgaggacggcgcgatcacctatatgcggaccgacggcgtccag
atggacggcagcgcgatcagtgccgcgcgtcgcgcgatcgccgaccgctacgacggcggt
tatgtccccgacaagccgcggcagtatcagaccaaggcgaagaacgcgcaggaagcgcat
gaagcgatccggccgaccgatttcggcagggaccgcgtcggcggcggcgaccatgcgcgg
ctctacgaactgatctggaagcgcgcgctagccagccagatggcgtcggcgcggctcgaa
cgcaccagcgtcgacctgtccgacggcaccggcaagacgatgctgcgcgcgacggggcag
gtggtgaaattccccggcttcctcgccctttatgacgaggggcgcgacgataacagcgac
gacgaggatggtcgtctgctccccgcgatggacaagggcgatgcgccggcgaagaccggc
gtcgaggtcgagagccacgagacgcagccgccgccgcgttattccgaggcgagcctcgtc
aagaagatggaggaactcggcatcgggcggccctcgacctatgcctcgatcctccaggtg
ctcaaggaccgcgcctatgtgcgcatcgagaagaaccgcttcatccccgaggaaagcggg
cggctgctgacggcgttcctcgaacgcttcttcgcgcgctacgtcggctatgatttcacc
gccgggctcgaggaggagctcgacgacgtgtcgggcggccgcgcgcagtggcaggcggtg
ctcgaccgcttctggcgcgatttcaagccgcgcaccggcgaggtgatggaacagaaaccg
tcggagattaccgcggcgctcgacgaattcctcggcgcctatctcttccccgacaagggc
gacggcagcgatccccggctttgtcccaattgcggcaccggccggctcgcgctgcgcggc
gggcgtttcgggccgttcatcgcatgcagcaattatcccgagtgcaaatatacccgcaag
ttcgcgcagccgggcggtgcggacaacggcgccgacaacggccccgaggcgatgggaacc
gaccccgacagcgggctcgaggtgacgaagcgcagcggtcgcttcggcccctatatccag
ctcggcgagggcaaggaggcgaagcgttcgtcgatccccaaggatatccctgccgaggat
ttcgacctcgactatgcgttgcggctgctcagcctgccgcgcgaggtcggcatgcatccc
gaaagcggcaagccgatcgtcgcggggctggggcgctatggtccctatctgctccatgac
ggcaaatatgcgaagttgaccggcaccgccgaaatcttcgagatcggcatgaacgccgcg
gtggcgcgcatcgccgacgcggcgaacggcggcggccgcggcgcgcgcgccaaggcagag
ccgctcaagaccttcggcccgcacccgacgagcggcggcgagatgaagctgatggcgggg
cgtttcggcccctatgtcaccgacggcacgaccaacgcgacgctgcccaagacggtcgaa
cccgacgcgctgacggtcgaggaagcggtcgcgctgatcgacgcgcgcgccgcgaaggga
ccggccaaggggaagaagaaagccgcgccgaagaaaaaggcgcccgcgaagaaggccccg
gcgaagaagaaggcgaaggaatag
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