Sphingopyxis sp. MG: C3E99_10220
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Entry
C3E99_10220 CDS
T05382
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spho
Sphingopyxis sp. MG
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spho03016
]
C3E99_10220 (rnd)
Enzymes [BR:
spho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
C3E99_10220 (rnd)
Transfer RNA biogenesis [BR:
spho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C3E99_10220 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AVA14164
UniProt:
A0A2L0VQG9
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All DBs
Position
2225444..2226628
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AA seq
394 aa
AA seq
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MQIHPLIESSAALLEFVDLIKDSDFIAVDTEFMRENTFWPELCLIQIADSNHAAAIDPMA
PDIDLQPLLDLLVDNEDVLKVFHAGGQDVEIIFNLTGKTPHSIFDTQIGQMALGQAEQVG
YSNLVEAWLGVQLDKGARFTDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLKKLVKTGRGH
WLDEEMEKLADPAHYSVDPDKAWLRIKAPTRKPEVLGRLKALAAWREREARNKNLPRGRI
VKDETLADLAAHPPKDQDGLGRVRGLSATWKSNDIGGRLMEALAGAQPLAKEDMPDRAPR
GPGLGKEGALVADLLKLLLKIRSRELNVAARLIARSDDLEALAAGRRDGIAMMQGWRYEV
FGQAALDLVEGRMGFAVRGGKLVMSEIEPAAADA
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatccatccgttgatcgagtccagcgcggcgctccttgaatttgtcgacctcatc
aaagacagcgatttcatcgcggtcgataccgagttcatgcgcgagaataccttctggccc
gaactgtgcctgatccagatcgcggacagcaaccatgccgcggcgatcgacccgatggcg
ccggacatcgacctgcagccgctgctcgacctgctcgtcgacaatgaggacgtgctcaag
gtcttccatgccggggggcaggatgtcgaaatcatcttcaacctgaccggcaagacgccg
cattcgatcttcgacacgcagatcggccagatggcgctcggtcaggccgagcaggtcggc
tattcgaacctggtcgaggcgtggctgggggtgcaactcgacaagggcgcgcgtttcacc
gactggagccgccggccgctcgacaagcgccagatcgactatgcgatcggcgacgtcacc
catctcgccaagatcttcccgatgatgctgaagaagctggtgaagaccggccgcgggcac
tggctcgacgaagagatggaaaagctcgccgacccggcacactacagcgtcgatccggac
aaggcgtggctgcggatcaaggcgccgacgcgcaaacccgaggtgctcggccggctcaag
gcgctggcggcgtggcgcgaacgcgaggcgcggaacaagaatttgccgcgcggccgcatc
gtcaaggacgagacgctcgccgacctcgccgcgcacccgccgaaggatcaggatgggctg
ggccgagtgcgcggcctgtcggcgacgtggaaatcgaacgatatcggcgggcggctgatg
gaagcgctcgccggtgcgcagccgctggcgaaggaagacatgcccgaccgcgccccgcgc
gggccggggctgggcaaggagggcgcgctcgtcgccgacctgctcaagctgctgctcaag
atccgctcgcgcgaactcaatgtcgcggcgcggctgatcgcgcgcagcgacgatctggaa
gcgctcgccgccgggcgccgcgacggcatcgcgatgatgcagggctggcgctacgaggtg
ttcggccaggcggcgctcgatctggtcgagggacggatgggtttcgccgtccggggcggt
aagctggtgatgagcgagatcgagccggcggcggccgacgcctga
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