Sphingopyxis sp. MG: C3E99_17820
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Entry
C3E99_17820 CDS
T05382
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spho
Sphingopyxis sp. MG
Pathway
spho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3E99_17820 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spho03021
]
C3E99_17820 (rho)
03019 Messenger RNA biogenesis [BR:
spho03019
]
C3E99_17820 (rho)
Transcription machinery [BR:
spho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C3E99_17820 (rho)
Messenger RNA biogenesis [BR:
spho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C3E99_17820 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
OB_RNB
NACHT
AAA_25
AAA
Fungal_virus_P2_C
AAA_14
Vitellogenin_N
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AVA15463
LinkDB
All DBs
Position
complement(3881498..3882754)
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AA seq
418 aa
AA seq
DB search
MHLKELKTKSPAQLVEMAEELGVEGASTLRKQDLMFSILKELAEEGEEIIGSGTIEVLPD
SFGFLRSPEANYLAGPDDIYVSPNQVRKHGLRTGDTVEGEIRAPKDGERYFALTKLTAVN
FDNPEAVRHRVNFDNLTPLYPNQKLSLDALDPTVKDKSARVIDLVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVYLIVLLIDERPEEVTDMQRSVNGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVEKDKLSKMWVLRRILMQMGTVDAMEFLLDKIKDSKTNEDFFESMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaagaactcaagaccaaatcgcccgcccaactcgtcgaaatggccgaggaa
ctgggcgtcgagggcgcatcgacgctgcgcaagcaggacctgatgttctcgatcctcaag
gaactcgccgaagagggcgaggaaatcatcgggtcgggcacgatcgaggtcctgcccgac
agcttcggcttcctgcgcagtcccgaggccaattatctcgccggccccgacgacatctac
gtctcgccgaaccaggtccgcaaacacggtctgcgcaccggcgacacggtcgagggcgag
atccgcgcgccgaaggacggcgaacgctatttcgcgctcaccaagctgaccgcggtcaat
ttcgacaatcccgaagcggtgcgccaccgcgtcaatttcgacaatctgacgccgctctat
ccgaaccagaagctgtcgctcgacgcgctcgacccgaccgtcaaggacaagtcggcgcgc
gtgatcgacctcgtcagcccgcagggcaagggccagcgcgcgctgatcgtcgcgccgccg
cgcaccggcaagacggtgctgctgcagaacatcgccaaggcgatcaccgacaatcatccc
gaggtctatctgatcgtcctgctgatcgacgagcggcccgaggaagtcaccgacatgcag
cgcagcgtcaacggcgaggtcgtctcctcgaccttcgacgagcccgcgacgcgtcacgtc
caggtcgccgaaatggtgatcgaaaaggcgaagcgcctcgtcgagcacaagaaggacgtc
gtcatcctgctcgattcgatcacccgcctcggccgcgcctacaacaccgtggttcccagc
tcgggcaaggtgctcaccggcggcgtcgatgccaatgcgctccagcggccgaagcgcttc
ttcggcgccgcgcgcaacatcgaggagggcggctcgctgtcgatcatcgcgaccgcgctg
atcgacaccggcagccgcatggacgaggtgatcttcgaggagttcaagggcaccggcaac
agcgagatcgtgctcgaccgcaaggtcgccgacaagcgcatcttccccgcgctcgacgtc
ggcaagtcgggcacccgcaaggaagagctgctggtcgaaaaggacaagctgtcgaagatg
tgggtgctgcggcgcatcctcatgcagatgggcaccgtcgatgcgatggaattcctgctc
gacaagatcaaggattcgaagaccaacgaggatttcttcgagtcgatgaaccaatag
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