Sphingopyxis sp. MG: C3E99_19050
Help
Entry
C3E99_19050 CDS
T05382
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spho
Sphingopyxis sp. MG
Pathway
spho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3E99_19050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spho03019
]
C3E99_19050
03009 Ribosome biogenesis [BR:
spho03009
]
C3E99_19050
Enzymes [BR:
spho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C3E99_19050
Messenger RNA biogenesis [BR:
spho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3E99_19050
Ribosome biogenesis [BR:
spho03009
]
Prokaryotic type
rRNA processing factors
C3E99_19050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AVA15674
UniProt:
A0A2L0VUT2
LinkDB
All DBs
Position
complement(4137409..4140057)
Genome browser
AA seq
882 aa
AA seq
DB search
MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEAAMRAEEDLDELEGDVAEVEG
HDDDENGDAPAPVTVGEDSDDDMDAETGDGDGESDTDNGDAEESKDDRGGRRGRGRARGG
RKGRGRGRNGDDDGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAG
RYCVLMPNTMHGGGISRKISNGADRRKLKAMIDDLNLPPTMGCIVRTAGMSRTKTEIKRD
FDYLARLWDEIREKTLASSAPALVHSDSDLVKRAIRDIYHKDIEEVLVEGDEGYKAAKQF
MKLLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDI
NSGRSTREHNIEQTALNTNLEAAHEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMK
EALKNDRARIQIGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSAL
RLIEEEAARGKGSRITLRASQEATFYLLNEKRRELREIEELYGVSVEILPDGETEGARMV
VEVGGPPPTQQRSFAPIVEIEEEEDESFDDETAEEDEEERADRPHDEGDGDGRKRRRRRR
RGRRGRRDDENGESGENGDAGDADTDAEADTETAAESADVEPAEAEAPAEAPADEAEAKP
RRRRGGRGRKKAEAADEGVTEAAPVEAEAPEAEAPEPVAVEAEVEAEAPAAEEKPKRKRA
PRKPKAAPAEAPAEAEATEAPAAAPEATPPVEAEAKPAPKKRASRSKKAVAAAEAAPAEA
AEAPVTAPEREAEPATVADGDDAVDEATGEPRRGWWQRTFGN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgttgatcgacgcgcggcaccgggaagaaacccgggtcgccgtcacc
aagggaaaccgcatcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggc
aatatctatctggccaaggtcacccgcgtcgaaccgtcgctgcaggcggcgttcgtcgaa
tatggcggcaaccgccacggcttcctggccttcagcgaaatccaccccgattattaccag
attccgaaggaagaccgcgaagcgctgctccgcgaagaggccgagcatgccgccgaggcg
gcgatgcgcgccgaagaggatctcgacgagctggaaggcgacgtcgccgaggtcgaggga
catgacgacgacgagaatggcgacgccccggcgccggtgacggtcggcgaggacagcgac
gacgacatggacgccgagaccggcgatggcgacggcgaatccgatacggacaatggcgac
gccgaggaatcgaaggacgaccgcggcgggcgccgcgggcgcggacgggcgcgcggtggc
cgcaagggtcgcggccgcggccggaacggcgacgacgacggcgaaagccgcatgtcgctg
cgccgccgctacaagatccaggacgtcatccgccgccgccaggtgatgctggttcaggtc
gtcaaggaggagcgcggcaacaagggcgccgccctcaccacctatctgtcgctcgccggc
cgctattgcgtgctgatgccgaacacgatgcacggcggcggcatcagccgcaagatctcg
aacggtgccgaccgtcgcaagctcaaggcgatgatcgacgatctcaatctgccgccgacg
atgggctgcatcgtccgcaccgccgggatgagccgcaccaagaccgagatcaagcgcgac
ttcgactatctggcccgcctgtgggacgagattcgcgaaaagacgctggcgtcgagcgcc
ccggcactggtccattcggacagcgacctggtcaagcgcgcgatccgcgacatctatcac
aaggatatcgaggaagtgctcgtcgagggcgacgagggctacaaggccgcgaagcagttc
atgaagctgctgatgcccagccacgcgcggcgcgtgaagcaatatgccgacccggtgtca
ctctatcagcgctacggcgtcgaggatcagctcgccgggatgctcaatcccgtcgtccag
ctcaagtcgggcggctatctggtcatcaacccgaccgaggcgctggtgtcgatcgacatc
aactcgggccgttcgacgcgcgagcataatatcgagcagaccgcgctcaacaccaacctc
gaggccgcgcacgagatcgcgcgccagctgcgcctgcgcgacatggcggggctgatcgtc
atcgacttcatcgacatggatcacggctcgaacgtccgcaaggtcgagcgtgcgatgaag
gaagcgctgaagaacgaccgcgcccgcatccagatcggccgcatctcgggcttcgggctg
atggagatgagccgccagcgtctgcgcaccggcgtgctcgaagcctcgacgcgcccctgc
ccgcattgcgagggcaccgggctcgtccgcaccgccagctcggccggtctgtcggcgctg
cgcctgatcgaggaggaagcggcacgcggaaagggcagccggatcacgctgcgcgcgagc
caggaagcgaccttctacctgctcaacgaaaagcgccgcgaactgcgcgagatcgaggaa
ctctacggcgtctcggtcgaaatcctgcccgacggcgagaccgagggtgcgcggatggtg
gtcgaggtcggcggtccgccgcccacgcagcagcgcagcttcgccccgatcgtcgagatc
gaggaagaggaagacgagagcttcgacgatgagaccgccgaggaggacgaggaggaacgc
gccgatcgtccgcacgacgaaggcgatggcgacggccgcaagcgccgccgccgccgccgc
cgcgggcgccgcggacgtcgcgacgacgaaaatggcgaaagcggcgagaatggcgacgcc
ggcgatgccgataccgacgcggaagcggacaccgaaacggcggccgaatcggctgacgtc
gagccggcggaagccgaagcgcctgccgaggctccggccgacgaagcggaagccaagccg
cgccgtcgtcgcggcggacgcggccgcaagaaggccgaggccgccgacgagggcgtgacc
gaagccgcaccggtcgaagcggaagctcccgaagccgaagcgcccgagcccgtcgccgtc
gaagccgaggtcgaggccgaagcgccggccgccgaagagaagccgaagcgcaagcgcgcg
ccgcgcaagcccaaggctgctccggccgaagccccggccgaagccgaagccaccgaagcc
cccgccgccgcgcccgaagcgacgccgccggtggaagccgaagccaagcccgcgccgaaa
aagcgcgcaagccgcagcaagaaggctgtcgccgccgccgaagccgccccagcggaagct
gccgaggctcccgtcacggcgcctgaacgcgaggccgaaccggcgaccgtcgccgacggc
gacgacgcggtggacgaagccacgggcgagccgcgtcgcggctggtggcagcgcaccttc
ggcaactga
DBGET
integrated database retrieval system
