Sphingopyxis sp. 113P3: LH20_01605
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Entry
LH20_01605 CDS
T04069
Name
(GenBank) DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03030
DNA replication
sphp03410
Base excision repair
sphp03420
Nucleotide excision repair
sphp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH20_01605
03410 Base excision repair
LH20_01605
03420 Nucleotide excision repair
LH20_01605
03440 Homologous recombination
LH20_01605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphp03032
]
LH20_01605
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_01605
Enzymes [BR:
sphp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LH20_01605
DNA replication proteins [BR:
sphp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH20_01605
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LH20_01605
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH20_01605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
DprA_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ALC10639
UniProt:
A0A0M3QCB1
LinkDB
All DBs
Position
complement(365769..368579)
Genome browser
AA seq
936 aa
AA seq
DB search
MSDKNHLYLVDGSSYIFRAYHRLPPLTNPHGVPVGAVYGYTTMLWKLAKDLNDAEEPTHL
AVILDHSSQSFRNEIYDQYKANRPPPPEDLVPQFPLIRDATRAFSLPCIEMEGFEADDLI
ASYAEAAVREGWDVTIVSSDKDLMQLVREPAEGPRVDMLDTMKNAHIGLEAVNEKFGVPP
ELVGDVLALMGDSVDNVPGVRGVGPKTATKLIQEYGSLTAALDGAATMKPSKLRDNLIEH
RALAELSRILVDLKRDCPLPDPLDALKLGAIPPEPLKRFLDEHGFRSLSAKLDNGTAPSG
PPTLPRKDAAPLTASAVPSTPALPLMPAIDRSLYETVTTIEALDRWIDAARAAHVVAVDT
ETASLDSVTGTLVGVSLSTGPGKACYIPLGHGGTDMFAERPDQIPVSDALGRLHALFTDE
AVLKVGHNLKYDIGVLAQHGIGIAPYDDTLVMSFALDAGKHQHGLDELAKLHLEHTCLSF
KEICGTGKAQISFAEVPLDRATAYAAEDAEVAWRLWRLLKLRLPIEGGTRIYEMVDRPLA
TIVEGMERAGIMVDRDYLARLSGEFANDMLRMEGEIHALAGQPFAIGSPKQLGEILFDKL
GLKGGRKGKSGVWSTDQTELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQINPVTG
RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFIAAPGHVLMAADYSQIELRL
AAHMADVPELKEAFAQGQDIHAATAIELFGEVNRDTRGKAKTVNFSILYGISRWGLAGRL
EITPDEAQALIARYFERFPGISDYIADTLESARAKGYTETLFGRKTWFPRIKAASQNERA
GSERAAINAPIQGTSADLIKRAMARMPAALADAGLSDVRMLLQVHDELVFEAPEEKAEAA
GEIIRRVMMGAAEPVLTLSVPLEVEIGIGKSWGDAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataagaatcatctctatctggtcgatggctccagctatatctttcgcgcctat
caccgcctgccgccgttgacgaacccccatggcgtgcccgtcggcgcggtctatggctac
accaccatgttatggaagctggccaaggacctgaatgacgccgaagagcccactcacctc
gccgtcatcctcgaccattcgagccagtcgttccgcaacgagatttacgaccagtataag
gcgaaccggccgccgccgcctgaggacctggtcccgcaattcccgctgatccgtgacgcg
acgcgcgcattttcactcccttgcatcgagatggagggcttcgaggccgacgatctgatc
gcaagctatgccgaggccgcggtacgcgagggctgggacgtgaccatcgtgtcatcggac
aaggacctgatgcagctcgttcgcgagcccgccgagggaccgcgcgtggacatgctcgac
acgatgaagaatgcccatatcgggctggaggcggtgaacgagaagttcggcgtccccccc
gaactcgtcggcgacgtgctcgcgctgatgggcgacagcgtcgacaatgttcccggcgtg
cggggcgtcgggcccaagaccgcaaccaagctgatccaggaatatggcagcctgaccgca
gcactcgacggtgcagcgacgatgaagcccagcaagcttcgcgacaatcttatcgaacat
cgcgccttggccgaattgtcccgcattctcgtcgacctcaagcgcgactgcccgctcccc
gaccccctcgacgcgctgaaacttggcgcgatcccgccggagccgctcaagcggttcctc
gacgaacatggcttccggtcgctttcggcgaagctcgacaacggcacggcgccctcgggt
ccgccgacgctcccgcgaaaggacgccgcgccacttaccgcttcggccgtgccatcgaca
cctgccctgccgctgatgccggcgatcgatcgctcgctctacgagaccgtcacgacgatc
gaggcgctcgatcgctggatcgacgcagcgcgggcggcgcatgtcgtcgcggtcgacacc
gagacagcaagcctcgacagcgtcaccggcacccttgtgggggtgagcctgtccaccgga
ccgggcaaggcatgctacattccgctcggccatggcggcaccgacatgttcgccgaaaga
cccgatcagatacccgtgtccgacgcgctcggccgtcttcacgcgcttttcaccgacgag
gcggtgctgaaggttgggcacaatcttaaatacgacatcggcgtgctcgcgcagcatggg
atcggcatcgcgccctacgacgatacgctggtgatgagcttcgctcttgacgcaggcaag
caccagcacggactcgacgagctcgccaagcttcatcttgagcacacatgtttgagtttc
aaggagatctgcgggactggcaaggcgcagatcagcttcgccgaggtaccactcgaccgt
gcgaccgcctatgccgccgaggacgccgaggtcgcctggcggctgtggcggttgctcaag
ctgcgtctgccgatcgagggcggcacccgcatctacgaaatggtcgaccgccctctggcg
acaatcgtcgaagggatggaacgcgcgggcatcatggtcgaccgcgactatcttgcgcgc
ctgtcaggcgagttcgcgaacgacatgttgcgcatggagggcgagatccacgccctggcc
ggtcagccctttgcgatcggcagcccgaagcaactcggcgagatccttttcgacaagctg
ggactgaagggcgggcgcaagggcaagtccggggtttggtcgaccgaccagactgaactc
gagcgactcgaacgcgacggcgtaccgattgcgcgcaagatcctcgagtggcgccagctc
gccaagctcaagtcgacctataccgacgcgcttcaggaacagatcaacccggtgaccggg
cgcgtccatacaagctacagcctcgtcggcgcgcagaccgggcggctgtcctcgaccgac
cccaatctgcagaatattccgatccggaccgagatcgggcgccagattcgcgatgccttc
atcgcagcgccgggccatgtgctgatggcggcggactatagccagatcgagctgcgcctc
gctgcgcatatggctgacgtgcccgaactcaaggaggccttcgcgcaggggcaggacatt
catgccgcgaccgcgatcgaattgttcggcgaggtcaaccgcgacacgcgcggcaaggcc
aagaccgtcaacttctcaatcctctacggcatctcgcgctggggtcttgccggacggctc
gagatcacgcccgacgaggcgcaggcgctgatcgcccgctatttcgagcgctttcccggc
atttcggactatatcgccgacacgctcgagagcgcgcgcgccaagggctataccgagaca
cttttcgggcggaagacctggtttccgcgcatcaaggcggcgagccagaacgagcgcgca
ggaagcgagcgcgccgcgatcaacgcgccgatccagggcaccagcgccgatctcatcaag
cgcgcgatggcgcgcatgccggcagcgctcgccgacgcgggactatcggatgtcaggatg
ctgctccaggtccacgacgaactcgtcttcgaggcgcccgaagagaaggccgaagcggcg
ggcgagatcatccgccgcgtgatgatgggcgccgccgaacccgtcctgaccctctcggtt
ccgctggaggtcgagatcgggattggcaagagctggggcgacgcgcattga
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