Sphingopyxis sp. 113P3: LH20_03490
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Entry
LH20_03490 CDS
T04069
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH20_03490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphp03019
]
LH20_03490
03016 Transfer RNA biogenesis [BR:
sphp03016
]
LH20_03490
Enzymes [BR:
sphp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LH20_03490
Messenger RNA biogenesis [BR:
sphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LH20_03490
Transfer RNA biogenesis [BR:
sphp03016
]
Prokaryotic type
tRNA degradation factors
LH20_03490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
BioW
Motif
Other DBs
NCBI-ProteinID:
ALC11009
UniProt:
A0A0M3QCI7
LinkDB
All DBs
Position
741279..743579
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AA seq
766 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLDLVVA
ATHDAVMMVESEANELSEEVMLGAVMFAHDACREVVKAIINLAEQAAKDPWEIASSDDNA
ALKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKEQFVADGLDPQAVMAGIKLVKK
LEAEIVRTAILKEGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTK
ESEQMVDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD
DFPYTIRLTSDITESNGSSSMATVCGGSLSLMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKAKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLDQIEAARKWISGIVEEPEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVADVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPPREPRERGDRGDRG
PRREGERGRGGRDRGPRRDGEGRGPRRERSDNVPEDEGHVPDFLKD
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgaccctcgaaacg
ggcaaggttgcccgtcaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtc
ctgtgcgccgtgaccgccgcgaagtcggtcaaggaagggcaggatttcttcccgctcacc
gtccattatcaggaaaaatattcggccgcagggcgtatcccgggcggcttcttcaagcgc
gaacgcggcgcgaccgaaaaggaaacgctggtcagccgcctgatcgaccgcccgatccgc
ccgctgttccctgaaggcttttataacgagatcaacgccatcgctcaggtcctgagctat
gacggccataatgaacccgacattctcgcgatggtcgccgcctcggctgcgctcaccatc
tcgggtgtgcccttcatgggtccgatcggcgctgcccgcgtcggttacctcaacggcgaa
tatattctgaaccccaccgacgagcaggttgccgaaggcgatctcgacctcgtcgttgcc
gcgacgcacgacgcggtgatgatggtcgaatccgaggccaatgagctttccgaagaggtc
atgctcggcgcggtaatgttcgcgcacgacgcctgcagggaggttgtgaaggcgatcatc
aatcttgcggaacaggctgccaaggatccttgggaaatcgcctcgtcggacgacaatgcc
gcactcaaggacaagctgaagaagctgatcggcaaggacattgccgcagcctacaagctc
accgacaaatcggctcgctccaatgccttgaacgaggcgcgcgcgaaggcgaaggaacag
ttcgtcgccgatgggctcgacccgcaggcggtgatggccggcatcaagctggtcaagaag
ctcgaggccgaaatcgtgcgcaccgccatcctcaaggaaggcaagcgcatcgacggccgc
accacgacccagatccgtccgatcgtcgcggaaacgcacttcctgccgcgcgcgcacggt
tcggcgcttttcacccgcggcgagacgcagacgatcgcgacctgcacgctcggcaccaag
gaaagcgagcagatggtcgatggcctcaacgggctcagctaccagaatttcatgctccac
tacaacttcccgccctattcggtcggtgaagttggccgcttcggcgccccgggccgccgc
gaagtcggccacggcaagctcgcctggcgcgcgctgcatccggtgctgccgtcgaaggac
gacttcccctacacgatccgcctgaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgacggtgtgcggcggctcgctgtcgctgatggacgccggggtgccgatcaagcgg
ccggtctcgggcatcgcgatgggcctgatccttgaaggcaaggattatgcgattctctcg
gacatcctgggcgacgaggaccacctcggcgacatggatttcaaggtcgcgggcacgtcc
gagggcatcaccacgatgcagatggacatcaagatcgccggcatcacgaaggaaatcttc
gaggccgcgcttgcgcaggccaaggaaggccgcgcgcacattctcggcgagatgaacaag
gcgctcggcgagacccgcagcgaattgtcggcgcatgcgccgcggatcgagacgatgcag
atcgacaaggcgaagattcgcgacgtcatcggcaccggcggcaaggtgatccgcgaaatc
gtcgcgacgaccggggccaaggtcgacatcgacgatgagggcctgatcaagatctcgtcg
agcgacctcgaccagatcgaggctgcgcgcaaatggatcagcggcatcgtcgaggaaccc
gaggtcggcaagatctatgacggcaaggtcgtcaatctcgtcgatttcggggcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcaagaatgagcgcgtc
gagaaggtcgccgacgtcctgagcgaaggccaggaggtcaaggtcaaggtcctcgaaatc
gatccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgaccaggaaacgggcgaggaa
cttgaagacacccgcccgccgcgcgaaccgcgcgagcgcggtgatcggggcgaccgcggc
ccgcgccgtgaaggcgagcgcggccggggcggccgcgaccgcggtccgcgccgcgatggc
gaaggccgcggcccgcgccgcgagcgcagcgacaatgttcctgaagatgagggtcatgtg
cccgactttctgaaggactga
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