Sphingopyxis sp. 113P3: LH20_04400
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Entry
LH20_04400 CDS
T04069
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH20_04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_04400
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH20_04400
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH20_04400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
DUF87
AAA_16
AAA_22
FATC
AAA_33
DUF2963
SWI2_SNF2
Kinesin
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ALC11188
LinkDB
All DBs
Position
complement(919191..921377)
Genome browser
AA seq
728 aa
AA seq
DB search
MAIQIRTSLDEIDTAEGYVPHRPARPDKVEGGKRFELVSDYEPAGDQPTAIRELVGTARA
GERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVVDSREIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKKIASLNHVRVYANSHYVTPGPTLKQATEAIRHELAER
LKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDLMRPQTV
SVSATPGTWEMERTQGVFAEQVIRPTGLIDPPVEIKPVEEQVDDLIAEAKKTAAAGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMRETDR
RRAKQLAYNEEHGITPESVKKQIGDIIAHVASKDGVTIELGDDRPDHMVGHNLRAYIAEL
EKKMRDAAANLEFEEAGRLRDEIRRLEADELGLPPDQQVAPMVGRSNEGKPGTRKGRFGK
QSRTKWGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggccatccagattcgcacctcgctcgacgaaatcgatacagccgagggctatgtcccg
caccgccccgcgcgcccggacaaggtcgagggcggcaagcgcttcgagctcgtcagcgac
tatgagcccgcgggcgaccagccgaccgcaatccgcgaactcgtcggcaccgcgcgcgcg
ggtgagcgcgatcaggtgctgctcggcgtcacggggtcgggcaagaccttcaccatggca
aaggtgatcgaggaattgcaacgacccgcgctgattcttgctccgaacaagatcctcgcc
gcgcagctttatggcgagttcaaaagcttctttccgaacaatgcggtcgaatatttcgtc
agctattacgactattatcagcccgaggcctatgtgccgcgctcggacacgtacatcgag
aaggaaagcagcgtaaacgaggccatcgaccgcatgcgtcactcggcgacgcgcgcgctc
ctcgaacgcgacgacgtgatcatcgtcgcgtcggtttcctgcctttatggcatcgggtcg
gttgaaacctattcggcgatgatcttcgatttgaagaaggggcaggtcgtcgacagccgc
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgaccaggcgttcgcgcgc
ggcaatttccgcgtgcgcggcgacagcctcgaaatattcccctcgcactatgaggatatg
gcgtggcgcgtcagctttttcggcgacgagatcgaggagattaccgagttcgatcctttg
accgggaaaaagatcgccagcctcaatcatgtccgggtctatgcgaacagtcactatgtt
accccggggccgacgctcaagcaggctaccgaggcgatccggcacgaactcgccgagcgc
ctcaaggaactcgaagccgagggacgcctgcttgaagcccagcgccttgaacagcgcacc
aatttcgaccttgaaatgatcgccgcgactggaagctgcgccggcatcgagaattacagc
cgctttctcaccggccgcctccccggcgagccgccaccgacattgtttgaatatctgccc
gacaatgcgctgctcttcgtcgacgagagtcaccagacgatcccgcagatcggcgcgatg
tcgaaaggcgaccatcgccgcaagatcacgcttgccgaatatggcttccgcctgccctcc
tgcatcgacaaccgcccgttgcgctttgccgaatgggatctgatgcgtccgcagaccgtc
agcgtctcggcgacgccaggaacctgggagatggaacgcacgcagggcgtctttgccgag
caagtgatccgccccaccggcctcattgacccgccggtcgagatcaaaccggttgaagag
caggtcgacgatctgatcgctgaggcgaagaagacggcagcggcgggttaccgaacgctg
gtcacgacgctgacaaagcgaatggccgaggatctgaccgagtttctgcacgaggcgggc
ctcaaggtccgctacatgcactcggatgtcgagacgctcgaacgcatcgagatcatccgc
gacctgcgccttggcgtgttcgatgtgctcgtgggcatcaatctcctgcgcgaagggctc
gacatccccgaatgcggactcgttgcgatcctcgatgccgacaaggaaggcttcctgcgg
agcgaaaccagcctcgtccagacgatcggccgcgccgcgcgcaacgtcgatggccgcgtc
attctctatgccgaccggatcacgggcagcatggagcgcgcgatgcgcgagaccgaccgc
cgccgcgccaagcagctcgcctataatgaagagcatggcatcacgcccgaaagcgtgaag
aagcagattggcgacatcatcgcgcatgtcgcatcaaaggacggcgtcaccatcgagctt
ggcgacgaccggcccgatcatatggtcggccacaatctgcgcgcctacatcgccgagctc
gaaaagaagatgcgcgatgctgctgcaaacctcgagtttgaagaagcagggcgcctgcgc
gatgaaattcgccggctcgaggccgatgagctcggactgccccccgaccagcaagtcgcg
ccgatggtcgggcgctcgaacgagggcaagccgggcacccgaaaggggcgctttggaaag
cagagcaggaccaaatgggggcgctag
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