Sphingopyxis sp. 113P3: LH20_05345
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Entry
LH20_05345 CDS
T04069
Name
(GenBank) ATP-dependent endonuclease
Organism
sphp
Sphingopyxis sp. 113P3
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
DEAD
ResIII
DUF1525
Motif
Other DBs
NCBI-ProteinID:
ALC11374
UniProt:
A0A0M5IL26
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Position
complement(1084896..1088294)
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AA seq
1132 aa
AA seq
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MSNESKVLKDDGARRHAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVSPRAIAAVT
FTELAASELLSRVREFVANLSAGVIATELRVALPDGLSEVHRRNLAAASAAIDEITCSTI
HGFCQRLIKPYPAEADIDPGAAVMDRNQADLAFLEIVDGWLRERLSGGQSGILAEMVLHS
PGETVALIHKIAENLRRRPTLAAPPVSALDGHLAAFRQAAADFTGFMSATAAAEPETATI
VERLAEMVAVLANAPDPGTPAGLVQLLTSRPHPDLCTKAGAFASYRKKGKWAAAAKQAGL
SKADGDRLNDAAETHYAACCDAWTALVQAAAGHALAALIDEAHPILQRYRDHKRASAQLD
FDDLIFAARALLRDHDAVRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCGDPVDGNVDWA
RFQIRPGALFLVGDPKQAIYRFRGADVGAYVQARDAFRAQDPGSLLSISTNFRSCASILT
FVNERFEAVLSADGQPGFTALDPFHDDRGGLCVAALDIAVADENGKASAEQQRDAEADAI
AELCARLIESHPIIDRRSGAERPCQPGDIALLAPTGAELWRYEEALERRGIPVATQAGKG
LFRRQEVQDLIALTRVLADRRDTLALGALLRGPLVGLTEEDLLDIIWGLPRSEEQPDRIP
RLDLSIDPAVIAHPLAREVIERLQSLSRRGNSTTPHELLSQAVDVLRVRPLLLDRHRGQA
ERALANVDLYLSLSTGYAVRGLRAFAEAMTAAWSDEARAVEGRPDAQEEAVALFTMHAAK
GLEWPIVIPVNTMTGVMAPDSAVIDRRTETFYCPVLGVVPEGYETARQAEKEELDRERIR
LWYVAATRARELLVLPRLDATPSKSAWIGLVDLSLADLPGLDVSHLPAGLAAAGAGAGNT
QTRASFAAEAEAIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSADDQPPELEAAVL
VQGGRERGLILHKLMEEVLTGEIPEAEAALTERAGHLIRALGQSPVADPATGLSAQELAA
CVARTLALPDIAALGPGLLAEFPVYSAQAADGVETATAGIADALTLTAEGRPAVVVDWKS
DVTPAPGTLDHYRAQVRAYLDMTGAERGLIVLMTSGAVIPVLPTKPTESEAA
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgagtccaaggtgctgaaggacgacggcgcgcgccgccatgcgatcagcctt
catgatcgctccatcctggtcgaggccggcgcgggttcgggcaagaccgccgtcatggct
ggacgcatcgccgccatgctcgccgaaggcgtttccccacgcgccatcgccgccgtcacc
ttcaccgagctcgccgcgagcgaattgctgtcgcgtgtccgcgagttcgtcgccaacctc
tcggccggtgtgatcgcgaccgagctacgcgtggcgctccccgatggcctgtcggaggtc
catcgccgcaatctcgccgccgccagcgccgcgatcgacgaaatcacctgctcgaccatc
cacgggttttgccagcggctgatcaagccctatccggcggaggccgacatcgaccccggc
gccgccgtgatggatcgcaaccaggccgatctggccttcctcgagattgtcgatggctgg
ttgcgcgagcggctgtccggcggtcaaagcggcatcctggccgagatggtgctgcatagc
cccggcgagacggtggcgctgatccacaagatcgccgagaatctgcgccgccgccccacg
ctcgctgcgccccctgtctcggcacttgacggccaccttgcggcgtttcggcaggcggcg
gcggatttcacgggcttcatgagcgctacggcggcggccgagccggagaccgcgacgatc
gtcgaacggctggccgaaatggtcgcggtcctggcgaacgctccagacccggggacgccc
gcgggcctcgtccagctcctgacctcgcgtcctcacccggatctctgcaccaaagccggc
gccttcgcttcctaccgcaagaaagggaaatgggcggccgccgccaagcaggccggactt
tccaaggccgacggcgatcggctgaacgacgcggccgagacccactacgccgcctgctgc
gatgcctggaccgcgctcgtgcaggccgccgccggccatgccctcgctgcgctgatcgac
gaggcgcatcccatcctgcaacgctatcgcgaccacaagcgcgccagcgcccagctcgat
ttcgacgatctgattttcgcggcgcgcgccttgctgcgcgaccacgatgccgtgcgccgg
gcgctgggacagcgtttcgcccacgtcctcgtcgacgagttccaggacacagaccccctg
caaaccgagatcttctggcgtctgtgcggcgatccggtcgatggcaacgtcgactgggcg
cggttccaaatccggccgggcgcgctcttcctggtcggcgacccgaagcaggcgatctat
cgcttccggggcgccgacgtcggcgcctatgtgcaggcgcgcgacgccttccgcgcccag
gaccccggcagccttctgtcgatctccaccaacttccgctcctgcgcctcgatcctcacc
ttcgtcaacgagcgcttcgaggccgtgctctcggccgatggccagccgggcttcaccgct
ctcgacccgttccatgacgatcggggtggcctgtgcgtggcggctctcgacatcgccgtg
gccgacgaaaacggcaaggccagcgcagaacagcagcgggacgccgaagccgacgccatc
gccgagttgtgcgcccggctgatcgaaagccaccccatcatcgaccgtcgcagcggcgcg
gagcgcccttgtcagccgggcgacatcgccttgctggcgccaaccggcgccgagctgtgg
cgctatgaggaagccctggaacgccgcggcatccccgtggcgacccaagccggcaagggg
ctgttccgccgccaggaggtgcaggatctgatcgcgctgacccgcgttctggccgaccgc
cgcgacacgctggcgctcggcgcgctgctgcgcgggcctctggtcggactcaccgaagaa
gacctgctggacatcatctggggacttccgcgctcggaggaacagccggatcggattccg
cgcctggatctcagcatcgatcccgccgtcatcgcgcacccgctcgcgcgcgaagtcatc
gagcggctgcaatcgctctcccggcgcggcaacagcacgaccccgcacgagctgctctcg
caggccgtggacgtgttgcgcgtccgtccgctcctcctcgatcgccatcgcggccaggcc
gagcgcgcgctcgccaatgtcgatctctatctcagcctgtcgaccggctacgccgtgcgc
ggcttgcgcgccttcgccgaggcgatgacagcggcgtggtccgatgaggcccgcgcggtc
gagggacggcccgacgcccaggaggaagcggtcgcgctcttcaccatgcacgcggccaag
gggctggaatggccgatcgtcattccggtcaacaccatgaccggcgtcatggcgcccgac
agcgccgtgatcgaccgccggaccgagaccttctattgcccggtcctgggcgtcgtgccc
gagggctacgaaaccgcgcgccaggcggaaaaggaggagctggaccgcgaacgcatccgg
ctctggtatgtcgcggccacccgcgcccgcgaactactcgtcttgccccggctcgacgcc
acgccgtcgaaatcggcctggatcggtctcgtcgatctgtcgctcgccgaccttcccggc
ctggacgtctctcacttgcctgccggtctcgcggccgcaggtgcgggcgcgggcaacacc
cagacgcgcgcgagcttcgccgcagaagccgaagccatcgcggccgcgcagacgcggttg
acctggctcgcgcccagccgtgacgaaaacgccgccgggaccgtgctgcgggaagaagaa
gccgcgctctggacgggatcggccgacgatcagccccccgagctggaagcagccgtcctc
gtgcagggaggccgcgagcgcgggctgatcctccacaagctcatggaagaggtgctgacc
ggagaaattcccgaagcggaagccgccctgactgaacgggctggccacctcatccgagcc
ctcggccagtctccggtcgccgacccggcgacggggctgtcggcgcaggaactagcggcc
tgtgtcgcccggaccctggctctgcctgacatcgcggccctggggccgggtcttctggcc
gaatttcccgtctattccgcacaggcggccgacggtgtggaaaccgcaacggccgggatt
gccgatgccctgaccctgacggccgagggccgccccgccgtcgtcgtggactggaaaagc
gatgtgacgccggcgccgggaacgctcgatcactatcgcgcgcaggtgcgggcctatctc
gacatgaccggagccgagcgcggactgatcgtgctgatgacctccggcgccgtcattccc
gtcctgccgacgaagccgaccgagagcgaggcggcctga
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