Sphingopyxis sp. 113P3: LH20_07540
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Entry
LH20_07540 CDS
T04069
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp00260
Glycine, serine and threonine metabolism
sphp00460
Cyanoamino acid metabolism
sphp00630
Glyoxylate and dicarboxylate metabolism
sphp00670
One carbon pool by folate
sphp00680
Methane metabolism
sphp01100
Metabolic pathways
sphp01110
Biosynthesis of secondary metabolites
sphp01120
Microbial metabolism in diverse environments
sphp01200
Carbon metabolism
sphp01230
Biosynthesis of amino acids
sphp01240
Biosynthesis of cofactors
sphp04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LH20_07540 (glyA)
09102 Energy metabolism
00680 Methane metabolism
LH20_07540 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
LH20_07540 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
LH20_07540 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
LH20_07540 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
LH20_07540 (glyA)
Enzymes [BR:
sphp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
LH20_07540 (glyA)
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Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
ALC11803
UniProt:
A0A0M3QD17
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Position
complement(1538450..1539757)
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AA seq
435 aa
AA seq
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MTTETLDKPIKSAGYFTDGVASVDPAIAAAMKHELDREQFQIELIASENIVSKAVLEAQG
SVFTNKYAEGYPGRRYYQGCAPSDEVETLAIDRAKQLFDCNFANVQPHSGAQANGAVLLA
LTKPGATILGMSLDAGGHLTHGAAPAMSGKWFNAVQYGVRADDHLVDFEQVERLAKEHRP
ALIIAGGSAYPRTLDFARFRAIADDVGALLMVDMAHFAGLVAGGAHPSPMQHAHVVTTTT
HKTLRGPRGGMILTNDEAIAKRINSAVFPGLQGGPLMHVIAAKAVAFGEALRPEFKSYAK
ATIANAQALANRLKARGADLVAGGTDTHLALIDLRPLGVTGRDADEALERSAITCNKNGI
PFDPLPPIKTSGIRVGSPAGTTRGFGIAEFEEIGDMVADVLEALRDKGEHGDADVEANVR
GRVRALCERFPIYQD
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgaaacgctcgacaagcccatcaaatcggccggctatttcaccgatggcgtc
gctagcgttgaccccgccatcgccgcagcgatgaagcatgagctcgaccgcgaacaattt
cagatcgagctcatcgcgagcgagaacatcgtctcaaaggcggtactcgaggcgcagggg
tcggtgttcaccaacaaatatgccgagggctatccgggccgtcgttactaccagggctgc
gcgccttcggacgaagtcgagacgctggcgatcgaccgcgccaagcagctgttcgactgc
aacttcgcgaacgtccagccgcactcgggcgcgcaggcaaatggcgccgtgctgctcgcg
ctgacgaagcccggcgcgacgatcctcgggatgagcctcgatgccggcggacacctgacc
cacggcgcggcgcccgccatgtcgggcaaatggttcaacgcagtccaatatggcgtgcgg
gctgatgatcatctcgtcgatttcgagcaggtggagcggctcgcgaaggagcatcgccct
gccctcatcatcgcgggcggttcggcctatcccaggacgctcgacttcgcgcgcttccgc
gccattgccgacgatgtcggcgcgcttttgatggtcgacatggcgcatttcgcagggctc
gttgcgggcggcgcgcacccctcgccgatgcagcatgctcatgtcgtcaccacgaccacc
cacaagaccctccgcggtccgcgcggcggcatgatcctgaccaacgacgaggcgatcgcc
aagcgcatcaactcggcggttttcccgggtctccagggcggtcctctgatgcacgtcatc
gcggcaaaggcggtggcgttcggcgaagcgctgcgccctgagttcaagagctatgcaaag
gcgacgatcgccaatgcacaggcgcttgcgaaccggctgaaggcacgcggcgccgatctc
gtcgccggcggaaccgacacccacctcgcgctcatcgatctgcgcccgcttggcgtcacg
ggccgcgacgccgatgaggcgctcgagcgcagcgcgatcacctgcaacaagaacggcatt
cctttcgacccgttgccaccgatcaagaccagcggcattcgcgtcggctcgcctgccggt
acgacgcgcggtttcggcattgcggagtttgaggaaatcggcgacatggtcgccgacgtg
ctcgaagcattgcgcgacaagggcgagcatggcgacgccgatgtcgaggccaatgtcagg
ggacgcgttcgcgcgctctgcgagcgcttccccatctatcaggactga
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