Sphingopyxis sp. 113P3: LH20_11495
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Entry
LH20_11495 CDS
T04069
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03030
DNA replication
sphp03430
Mismatch repair
sphp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH20_11495
03430 Mismatch repair
LH20_11495
03440 Homologous recombination
LH20_11495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphp03032
]
LH20_11495
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_11495
Enzymes [BR:
sphp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LH20_11495
DNA replication proteins [BR:
sphp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LH20_11495
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LH20_11495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
COE1_HLH
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ALC12575
LinkDB
All DBs
Position
2281080..2284571
Genome browser
AA seq
1163 aa
AA seq
DB search
MAYSPFVPLRVFSSFTMLEGAIEPKTIAKAARDRGFPAIAVADRNGLYGVMAFGDACKAA
GVQPIIGALLSIARPGQRMANGAPLIDWAALYAQDAKGYDNLCALVSAAHLDRPVEQDPH
VALSALAGRTDGLICLTGGGEGALARLLADDQKTPAEDYVEQLEALFGDRLYIELSRRGD
PVETAAEAALIEMAYRRALPLVATNPANFVEPQFHPAHDAMLCIAQSAYVESEDRRVSSP
EAWLKPAEAMEDAFSDLPEAIRNTLVVAQRCAFMAPKRAPILPSLAGDREGEAAQLKADA
HAGLAARLALYPDLSDAERQAYVDRLEYEIGVITQMGFPGYFLIVADFIKWAKAHDIPVG
PGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQ
EKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERALNG
VSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMP
VTQFDMKYVESAGLVKFDFLGLKTLSVLKEAGRLLALRGIDVDLGQLGWDDPAVYELLQR
GDTVGVFQLESEGMRRTLSAVKPTNFGDIIALVALYRPGPMDNIPLFGARKNGREAIAYP
HPLLKDILEETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQAEMDAQRETFVK
GCAEHNGIDAKKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFFAASMS
FDSHQTDKLSIFIDDMRRLDIAVAPPSVNESEADFSVGRTDEGLVVRYALGALKGVGERA
MEELVAERRARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDGIEPDRPRVFAGAEAL
LACANASAHERSTGQGGLFGGDIDLAPVLQLPAAEPWTLAERMSREKDAFGFYFSAHPVE
QFDAIVAARGARTYGEICETVEMTPGTRIPMTMAAMVESARPRVSQRGNRFLNLTLSDRS
GQFQSSCFDEQAGKVLETLAADGGCALLSVELDLLEGEETPRVTVRGAQSLADMAATAAL
QLTCRIEQASAIDDMVRICERRDDARGRIIITTEDPLTGDPVRINLGRNFVLGPDVVARL
EVVAGVAQPSLSLYTPRDFRARG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcctacagccccttcgttccgttgcgcgtcttttccagcttcacgatgctggagggt
gcgatcgagcccaagacgatcgccaaggccgcgcgcgaccggggctttcccgcgattgct
gttgccgatcgcaacgggctttacggcgtcatggctttcggcgatgcgtgcaaagccgcg
ggcgtacagccgatcatcggcgcgcttttgagcatcgcgcggcctggccagcgcatggcg
aatggggcgccgctgatcgactgggcggcgctctatgcacaggacgccaagggctacgac
aatctttgcgcacttgtttcggccgcgcaccttgatcgacccgtcgagcaggatccgcat
gttgcgctttcagcgcttgccgggcgcaccgatggactcatctgcctgaccggcgggggt
gagggggcgctggcgcgcctcctggcggatgatcagaagacaccggccgaggattatgtc
gagcagctcgaggcgcttttcggcgaccggctctatatcgagctgtcgcggcgcggcgat
ccggtcgagacggccgcggaggcggcgctgatcgagatggcctatcgacgcgcattgcct
ttggtcgcaaccaatccagccaattttgtcgagccgcaatttcatcccgcgcacgatgcc
atgctctgcattgcccaatcggcctatgtcgaaagcgaggatcggcgcgtatcgagcccc
gaggcctggctgaagcccgccgaggcgatggaagatgcgttttcggatctgcctgaggcg
atacgcaacacgctcgtcgtcgcgcagcgctgcgccttcatggcgccaaagcgcgccccg
atcctccccagcctggccggcgaccgcgagggcgaggcggcgcagctcaaggccgatgcc
cacgcgggccttgccgcgcgcctggcgctctatcccgatctcagcgatgcggagaggcag
gcctatgtcgacaggcttgaatatgagatcggcgttatcacgcagatggggtttcccggc
tattttctgatcgttgcagacttcatcaaatgggccaaggcccatgatattccggtcggg
ccggggcgcggttcgggcgcggggtcggtggtcgcctgggcgctgaccatcaccgatctt
gatccgctcaagctcggcctccttttcgagcgctttttgaaccctgaacgcgtgtcgatg
cccgacttcgatatcgacttttgcgagacgcggcgcggcgaggtgatccgctatgtgcag
gaaaaatacggccgcgacacggtcgcgcagatcatcacgttcgggaagctgaaagcgcgc
gctgttctcaaggacaccggccgcgtgctccagatgagctatggccaggtcgaccggctg
gcaaagctcgtaccgaaccacccgaccgatccctggacgctcgagcgcgcgctgaacggc
gtgtccgagctcatgaccgaatataagcaggacgacggggttcggcgcctgttcgatatg
gcgcggcaactcgagggtttgccgcgacacagctcgacccacgcggcgggggtggtcatc
ggcgaccggccgctcgaccagctcgtgccgctctaccgcgacccgcgctcggatatgccg
gtgacgcagttcgacatgaaatatgtcgagagcgcagggctggtaaagttcgactttctg
gggctcaagacgctttcggttctgaaagaggccgggcgcctcctagcgctgcgagggatt
gacgttgacctggggcagctcggctgggacgaccctgcggtctatgaactgctccagcgc
ggcgataccgtcggggtgttccagctggaatccgaaggcatgcggcgcacgctgtcagcg
gtgaagccgacaaatttcggagatattatcgcgctcgtggccctctatcgtccagggccg
atggacaatatccccctcttcggcgcccgcaagaacgggcgcgaggccatcgcctacccg
catccactgctgaaagacatcctcgaggaaacctacggcatcttcgtctatcaggaacag
gtgatgcaggccgcgcagatcctcgcgggctacagcctcggcggcgccgacctcttgcgc
cgcgcgatgggcaagaagatccaggccgagatggacgcccagcgtgaaacctttgtgaag
ggttgcgctgaacataatggaattgacgcaaaaaaggcgaacgagctgttcgatttgatc
gacaagttcgcaggctatggcttcaacaagagccacgcggccgcctatgcgcttctcgcc
taccagaccgcctggctcaaagcccatcacccgcatgagttttttgccgcctcgatgtcg
ttcgacagccaccagaccgacaaattgtccatcttcatcgacgatatgcgacggctcgac
atcgccgttgcgcctccttcggtgaacgagagcgaggcggatttctcggtcggccggacc
gacgaagggctcgtggtgcgctacgcgctcggcgcgctcaagggcgtgggcgagcgcgcg
atggaggaactggttgccgagcggcgcgcgcgcggcgattttgcgagcctcgacgatttt
gcaagccgtatcgatcccaaattgctcaatcgccggcagatcgaagcgctggcaggcgcg
ggcgcgttcgacggtatcgagcccgaccgcccgcgcgtcttcgcgggcgcagaggcgctg
ctcgcctgcgccaatgcgtcggcgcacgaacgctcgacggggcaaggcggactgttcggc
ggcgacatcgatctcgcgcccgtcctccagcttcccgctgcggaaccctggacgcttgcc
gagcggatgagcagggaaaaggacgctttcggcttttatttctcggcgcacccggtcgag
caatttgatgcgatcgtagcggcgcgcggcgcgcgaacctatggcgagatctgcgagacg
gtcgaaatgacgcctggcacgcgaattccgatgacgatggccgcgatggtcgaaagcgcg
cgtccgcgcgtttcgcagcgcggtaatcgcttcctcaaccttaccctctcggaccgcagc
ggacagttccagtcaagctgcttcgacgagcaggcgggcaaggttctggaaaccctggcc
gcggacgggggctgcgctctgctttcggtcgaacttgatctgctcgaaggcgaggagacg
ccccgagtgacggtacgcggggcgcaatcgctcgcagacatggcggcaaccgccgcgctg
cagctgacctgccgtatcgagcaagcgagcgccatcgacgacatggtgcggatatgcgaa
cgccgcgatgacgcgcgggggcgcattatcatcacgaccgaggatccgctcaccggcgat
ccggtacggatcaatctgggccgcaactttgtcctcggccccgacgtggtggcgcggctc
gaggtcgtggccggggtcgcccagccgtcgctctcgctttacaccccccgggattttcgg
gcgcgcggctga
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