Sphingopyxis sp. 113P3: LH20_12080
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Entry
LH20_12080 CDS
T04069
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LH20_12080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_12080
Enzymes [BR:
sphp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LH20_12080
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LH20_12080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
HHH_2
NAT10_TcmA_helicase
nSTAND3
PIF1
NTPase_1
UvrD-helicase
AAA_22
AAA_29
RsgA_GTPase
AAA_17
AAA_28
DEAD
AAA_23
AAA_16
NPHP3_N
SLFN-g3_helicase
NACHT
AAA_5
ABC_tran
AAA
MeaB
T2SSE
cobW
CbiA
AAA_24
ATP_bind_1
TrwB_AAD_bind
SMC_N
AAA_7
HHH
Motif
Other DBs
NCBI-ProteinID:
ALC12691
LinkDB
All DBs
Position
complement(2419270..2421441)
Genome browser
AA seq
723 aa
AA seq
DB search
MLVGHVERVTFHSDESGFCVLRVKARGHRDLVTTVGHAAMISAGEWITASGEWTNDRNHG
LQFRARFLKTSEPSSIEGIEKYLGSGMIRGIGPVYAKRLVKMFGKDVFDVIEATPERLRE
VQGIGPMRAAKITAAWADQKVIREIMVFLHSHGVGTARAVRIFKTYGADAVQVMSDNPYR
LAKDIRGIGFRTADTIAEKLGIEKTAMVRIRAGISFALTEAMGEGHCGLPVTELKQLAAK
LLEVDGALIETALALELDDRTVVADTVGDIDCIFLGGLYHAEKAIADRLRSLLNGQLPWA
AIDTDKALPWIEGRTGLTLAPSQREAVSLALRSKVTVITGGPGVGKTTIVNSILRILAAK
SVNLLLCAPTGRAAKRMTEATGMEAKTIHRLLEFDPKAFGFKRGEDNPLECDLLVVDESS
MVDVMLMQSLLKAVPDTAALLIVGDIDQLPSVGPGQVLADIIQSHAVPVVRLTEVFRQAA
QSRIITTAHQINRGRIPDLGKVEGDTDFYFMPAADPEQAVPRIIDLVGKHIPRKFGFDPV
REVQVLCPMNRGGVGARSLNIELQAALNPNPTAKVERFGWTFAPGDKVMQIENDYDKDVF
NGDIGYIQSVDTDDGELLVDFDGREVSYQFGELDTLVPAYAATIHKSQGSEYPAVVIPVM
TQHYAMLQRNLLYTGVTRGKKLVVLVGQSKAIAIAVKNESGRRRWSKLDEWLQAAEDVIL
RSA
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgtgggccatgtggaacgggtgacgttccatagcgatgaaagtggcttttgcgtc
ctgcgggtcaaggcacgcgggcaccgcgacttggtcacgaccgtagggcatgcagcgatg
atttccgccggggaatggatcaccgcttcgggcgaatggaccaatgatcggaaccatggc
ctgcagttccgggcccggtttctgaaaacctcggaaccctcctcgatcgagggcatcgag
aagtatctcggctccggcatgatccgcggaatcggccctgtttacgccaagcggctcgtg
aagatgttcggcaaagacgtattcgatgtcatcgaagccacccccgaacggctgcgtgag
gtccagggcattggccccatgcgcgctgccaagatcactgcggcctgggcggatcagaaa
gtcattcgcgagatcatggtgttcctgcacagccatggggtcggaacagcgcgcgccgtg
cgcatcttcaagacctacggcgccgatgccgttcaggtgatgagcgataacccttatcgc
ctggccaaagatatccgcgggatcggctttcgcacagccgacacgatcgcggagaagctg
ggcatcgagaagacggccatggtacggattcgcgctggcatctccttcgccctcaccgag
gccatgggcgaagggcactgcggactgcccgtgaccgaattaaaacagctggctgccaag
ctgctcgaggttgatggcgcgctgatcgagacggcgctggcgctggaactggatgatcgg
acggtagtggccgacacggtcggcgacatcgactgcatcttccttggcgggctgtatcac
gccgaaaaggccatagcagaccggttaagatcgctgctcaatggacagctgccgtgggct
gccatcgacacggataaggccctgccgtggattgaggggcgcacgggcctgacccttgcg
cccagtcaaagggaagccgtgtcacttgccttgcgatccaaggtaacagtgatcaccggc
gggcccggtgtcggcaagaccaccatcgtcaattccatcctgcgcatcttggcggccaag
tccgtcaatcttcttctgtgcgcacccacagggcgcgccgccaagcgtatgaccgaggcg
acgggcatggaggccaagacgatacatcgccttctggaattcgaccccaaggcgttcggg
ttcaagcgcggcgaagacaaccctctcgaatgcgacctgctggtcgtcgacgaaagctcg
atggtcgatgtcatgctgatgcagtcgctgctgaaggctgtgccggataccgccgcactg
ttgatcgtcggcgacatcgaccagttgccatcggtcgggcctgggcaggtcttggccgat
atcatccagtcgcatgctgtcccggtggtccgactgaccgaggttttccgccaggctgcc
caaagccggatcatcaccaccgcgcaccagatcaaccgcggccgcatccctgatttgggc
aaagttgaaggtgataccgacttctacttcatgccggccgctgatccggagcaggccgta
ccgcggatcatcgatctcgtcggcaagcacatcccacgcaagttcgggtttgatcctgtg
cgcgaagtccaggtgctatgccccatgaaccgcggcggggttggcgcgcggtcgctgaac
atcgagctgcaggccgcgctgaaccccaatccgacggccaaggtggaacgctttggttgg
accttcgcccccggtgacaaggtcatgcagatcgagaacgactacgacaaagacgtcttc
aacggcgacattggctacatccagtccgtcgacaccgacgacggcgaactgctggtcgac
ttcgatggccgcgaggtcagctatcagttcggcgaactcgacacgctggtccccgcctat
gcagcgacgatccacaagagccagggctcggaataccccgccgtcgtgatcccggtcatg
acccagcattacgccatgctgcagcggaatctcctctacaccggagtgactcgcggaaag
aagctcgtggtgctggtcggccaatccaaggctatcgccatcgcggtcaagaatgagtcc
gggcggcggcggtggtcaaaactcgatgagtggcttcaagcggccgaggacgtcatactg
cgctccgcgtga
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