Sphingopyxis sp. 113P3: LH20_13920
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Entry
LH20_13920 CDS
T04069
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH20_13920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphp03019
]
LH20_13920
Enzymes [BR:
sphp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH20_13920
Messenger RNA biogenesis [BR:
sphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH20_13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALC13050
UniProt:
A0A0M4DAV0
LinkDB
All DBs
Position
complement(2785648..2787030)
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AA seq
460 aa
AA seq
DB search
MEFKDFGLHADIERALAAKRYSEPTPIQEQAIPVLLQGRDLCGIAQTGTGKTAAFSLPSL
DYLLNNPRRPAPRGCRMLVLSPTRELAAQIAQSCRDYGRFTKFSVTTVFGGVPINRQIRE
LAQGVDILVATPGRLLDLIDQRALRLADVEIFVLDEADQMMDMGFIHSLRRIAKLLPEER
QNLFFSATMPKEIAALAQQFLNDPVTVSVAPQATTAEKVRQQVTFVEQKEKQALLHHVLK
SENIDRALIFTRTKHGADRVVRHLAGAGIQAYAIHGNKSQAQRTTALQAFRSGQVRLLVA
TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGLAISFVAPDEKAYLRDIE
RVTRTRAEPVKLPEGFTEMVRNLPKPAQAPRNTGGKGRDPQRQRDEALRRKGEGQRDAAH
RGPRREAQAGDGVQQPQRKRRFRPRRSGVGAHKGAVTRVG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaggacttcggcctccacgccgacatcgagcgagcactcgcggcaaagcgt
tacagcgagccgaccccgatccaggagcaggcgatccccgtcctgctccagggccgcgac
ctttgcggcattgcgcagaccggcaccggcaagaccgcagccttttcgcttccctcgctc
gactatctgctgaacaatcccaggcggcccgcgccgcgtggctgccgcatgcttgttctt
tcgccgacgcgcgagcttgcagcgcagattgcgcagagctgccgtgattatggccgcttt
accaaattcagcgtcacgaccgtcttcggcggcgtgccgatcaacaggcagatccgcgag
cttgcgcagggcgtcgacattctcgtcgccacgcccggccgcctgctcgacctcatcgac
cagcgtgcgcttcgcctcgcggatgtcgagatattcgtcctcgacgaggccgaccagatg
atggacatgggcttcatccattcgctgcgccggatcgccaagctcttgccggaagaacgc
cagaacctcttcttctcggcgacaatgccgaaggagatcgcggcgcttgcacagcagttc
ctcaatgatcccgtcaccgtctcggtagcgccgcaggcgacgactgccgaaaaggtccgc
cagcaggtgacctttgtcgagcagaaggaaaagcaggcgcttctccatcatgtgctgaag
agcgagaatatcgaccgcgcgctcattttcacgcgcaccaagcacggcgccgaccgcgtc
gtgcgccacctcgcgggcgccgggatccaggcttatgcgatccacggcaacaagagccag
gcgcagcggacgaccgcgctccaggccttccgctcggggcaggtgcggctgctcgttgcg
accgacatcgccgcgcgcggcatcgacgtctcgggggtgagccatgtgatcaacttcgag
atcccgaacgtgcccgagcaatatgtgcaccgcatcggccgcaccgcccgcgccggggcc
gaggggcttgcgatcagtttcgtcgcgcccgacgaaaaggcttatctgcgcgatatcgaa
cgggtgacgcgcacccgcgccgagccggtgaagctccctgagggttttacggaaatggtc
cgcaacctgcccaagcccgcccaggcgccgcgcaacaccggcggcaagggccgcgatccg
cagcgccagcgcgacgaggcgctgcgcaggaagggcgaagggcaacgcgatgcagctcac
cgcggcccgcgccgcgaggcgcaagccggtgacggcgtacagcagccgcagcgcaagcgg
cgttttcgtccgcgccgaagcggcgttggcgcgcacaagggcgcggtgacgcgcgtcggt
taa
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