Sphingopyxis sp. 113P3: LH20_15295
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Entry
LH20_15295 CDS
T04069
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LH20_15295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphp03021
]
LH20_15295
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_15295
Enzymes [BR:
sphp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LH20_15295
Transcription machinery [BR:
sphp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LH20_15295
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LH20_15295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
TmoB
Motif
Other DBs
NCBI-ProteinID:
ALC13321
UniProt:
A0A0M4CW08
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All DBs
Position
3093924..3094982
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AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPNHVICHLDEGATLNMELVADTGKGYVPATANRPADAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLNLTVETDGTVTPEDAVAYAARILQDQLQVFVHFEEAMN
DSGLIGMAAPSAASDESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaatatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gccggcggcgacggcaagcgcaaggcgaccttcgtggccgaaccgctcgagcgcggtttt
ggcctgacgctcggcaacgcgctgcgccgcgtgctgctctcgtcgctccagggcgctgca
atcacctcgatcaagatcgagaatgtgctccacgaattctccagcctcgccggcgttcgg
gaagatgtcaccgacatcgttctcaacgtgaagcagatcgcgctcaagatggaaggcgaa
ggcccgaagcggctccagctttcggcaaccgggcccgcgacggtaaaggcgggcgacatc
atggtgtcgggtgacatcaaggtgatgaaccccaaccatgtcatctgccacctcgacgag
ggtgcgacgctcaacatggaactcgttgccgataccggcaagggttatgttccggctacc
gccaaccgcccggccgacgcaccgatcggtctgatcccggtcgactcgctctattcgccc
gtccgtcaggtcgcctacaaggtcgacaatgcccgcatcgggcaggagcttgactatgac
aagctcaacctgaccgtcgaaaccgacgggacggtcacgccggaagatgctgtcgcctat
gccgcgcgcatccttcaggaccagctgcaggtcttcgtccacttcgaagaagcgatgaac
gacagcggcctgatcggcatggcagccccctcggcagccagcgacgaatcggacgtcaat
cagctgaaccgcttccttctgaaaaaggtcgacgagctcgaactctcggtccgcagtgca
aactgcctcaagaacgacaacatcatctacatcggtgacctcgttcagaagaccgaagcc
gaaatgctgcgcaccccgaacttcggtcgcaagtccttgaacgaaatcaaggaagtgctc
tcgtcgatgggtctgcgcctcggcatggatatcccgggctggccgcccgagaacatcgag
gaaatggccaagaagctcgagcaggaactgctgggctaa
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