Sphingopyxis sp. 113P3: LH20_15365
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Entry
LH20_15365 CDS
T04069
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH20_15365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphp03019
]
LH20_15365
03009 Ribosome biogenesis [BR:
sphp03009
]
LH20_15365
Enzymes [BR:
sphp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH20_15365
Messenger RNA biogenesis [BR:
sphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH20_15365
Ribosome biogenesis [BR:
sphp03009
]
Prokaryotic type
rRNA helicases
LH20_15365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALC13335
UniProt:
A0A0M4D0I8
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All DBs
Position
3105594..3107369
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AA seq
591 aa
AA seq
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MSFNHLSPVLADALVARGYEALTPVQSQVTEDAAHGRDLLVSAQTGSGKTVAFGLAMAGE
LLDGGRLPFAAAPLALIVAPTRELALQVSRELSWLYAKAGARIATCVGGMDASRERRNLN
QGVHIVIGTPGRLRDHLERGALDLESLRVAVLDEADEMLDMGFREDLEEILDATPQSRRT
LLFSATIPKPIAQLAKRYQRDALRISTVGEDRGHGDIAYQVVTVAPADIEGAVINLLRLH
EPDTAMLFCATRDNVRRLHARLVNRGFAAVALSGEHSQNERNHALQALRDRRARVCVATD
VAARGIDLPSLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVDAMLRG
ARIEAEWGNAPTAADVRQKDQERLIEKLLAPVEHEPDDLELAQRLLAERSPEDIAASLVR
AHRATMPPPEDLIDNGPPPRRERGGPLDQAGDHPHRGERSPRREGFDDSVWFRLNIGRRQ
NADPRWILPLLCRRGHVTKHEIGAIRIGPSETLFNIPLAIADRFAEAVQRSANADGEDES
GVAITPAPGGAAYPPRRDKTPRSGGKSFAGGGKPGGFKAKPYGKGKGRRPR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaatcatctttcacccgtcctcgcggacgcgcttgtcgcgcgtggctatgag
gcgctcacgcccgtgcagtcccaggttaccgaagacgcggcgcacggccgggacctgctt
gtttccgcccagaccgggtcgggcaagaccgtcgccttcggcctagcaatggcgggcgag
cttctggacggcggccgccttcccttcgccgccgcccccctcgcgctgatcgttgcaccc
acgcgcgagctggccctgcaggtcagccgtgagctcagctggctctatgcgaaggccggt
gcgcgtatcgcaacctgcgtcggcggcatggacgcgagccgcgagcgccgcaatctcaat
cagggcgtgcatatcgtgatcggcacaccggggcgcctgcgcgatcatctcgagcgcgga
gcgctcgaccttgaaagcctgcgggtcgcggtgctcgacgaggcggacgaaatgctcgac
atgggatttcgcgaggatcttgaagaaattctcgatgccacaccccaatcgcgtcgcacg
ttgctcttttccgcgacgatcccgaaaccgatcgcgcagctcgccaagcgttaccagcgc
gacgcgctacgcatttcgaccgtgggcgaagaccgcgggcatggggacatcgcctatcag
gtggtcacggtcgcgcccgccgatatcgaaggcgcggtgatcaatcttctgcgtcttcat
gagcccgacacggcaatgctcttttgtgcgacgcgcgacaatgtccggcgccttcacgca
cggctggtcaatcgcggattcgccgccgtcgccctgtcgggagagcacagccagaacgag
cgcaaccatgcgctgcaggcgctgcgtgaccgccgcgcccgcgtttgcgtcgcaaccgac
gtcgctgcgcgcggaatcgacttgccgagcctcagcctcgtcattcatgtcgaaatccca
cgcgatgccgaaacgctccagcaccgctcggggcgcaccggacgcgcgggcaagaagggc
accgcggtgctgattgtcccctatccgcgccgtcgacgcgtcgacgccatgctgcgcggt
gcgcgaattgaggccgagtgggggaatgcgccgaccgcggccgatgttcgccaaaaggac
caggagcgactcatcgaaaagttgctcgcgccagtcgagcacgagcccgatgacctcgaa
cttgcgcagcggctgctcgccgaacgctcgcccgaggatattgcggcgtcgctcgtccgc
gcgcatcgcgcgaccatgccgccgcccgaggacctcatcgacaacggccctccaccgcgc
cgcgagcgaggcgggcccctcgatcaggcgggcgatcatccccatcgcggcgagcgctct
ccccgacgcgaagggttcgacgacagcgtctggttccgactcaacatcgggcggcgccag
aatgccgatccgcgctggattctgccgctgctttgtcgccggggccatgtgacgaagcat
gagatcggcgcgatccgcatcggccccagcgagaccttgttcaacattccgctcgccatc
gccgaccgtttcgccgaggccgtccagcgcagcgccaacgccgatggcgaggacgagagc
ggagtcgcgatcacgccggcgcccggcggtgctgcctaccccccgcggcgcgacaagacg
ccgcgcagtggcggcaagtcctttgcgggcggcggaaagcccgggggtttcaaggcaaaa
ccctatggaaagggaaaaggacgccgaccgcgctga
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