Sphingopyxis sp. 113P3: LH20_16405
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Entry
LH20_16405 CDS
T04069
Name
(GenBank) helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sphp
Sphingopyxis sp. 113P3
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_16405
Enzymes [BR:
sphp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH20_16405
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LH20_16405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ALC13542
UniProt:
A0A0M4D435
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All DBs
Position
complement(3330331..3333303)
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AA seq
990 aa
AA seq
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MAKSKPTIYSIPVHRAFADALAAGLLARFADGALGLADGLILLPSNRARSAVQAAFVRAG
GQGLLMPRLAVIGDADLDESVGLALDGMDEDPIPPAIDPLRRRLLLAELIERHTPSGESA
ITGAAAFQLADGLARVIDQLCYEEVSPAALVDLDLGALAEHWQTSLERLRLLVDHWPAVL
ARTGSIDRADRRNRLLDRVAAEWRAAPPARFTVAAGITTAAPAIARLLRTVSELDRGMVI
LPGLDQGMAAEEWEALGPTRADPGGKARPLETHPQYHLKLLLDRMGASREEVMLWEASSP
FDGPSARSPFVSLLFAPADYTAQWQAAGDLSDAIVGISGAVFADDGQEAQGIALLMREAL
ETPGRTAALVTPDRGLAERVASALARWGIAVDDSAGQPLSRTPPGALLLLLADLAAAFDP
VALVSLLGHPLVKASEGRSEWLDQVRRLDLTLREPGLQPGWAGVSQRIAERFADPAARGH
GHAVQLQPWWEKVGAALGAALAPFASGPTPPATLLAALQIALETLAGDAVWTGPAGRMLA
GLFDEWALARGDGPAFVDPGDFPAMLGQLLGQTSVRPPYGGHPRLFIWGLLEARLQRADL
MILGGLDEGRWPAATQPDPWLAPGIRRLLGLPAPERQQGMAAHDFAGALGAGNIVVTRAE
RSGGDPAVASRFWLRLLALAGEIPEPRPGGVPLTRLAAELDTPPGDPQPVPRPAPRPAAA
DRPRRISVTAVDRLARDPFAYYANAMLGLSVLDPLSAAPDPRWRGTRVHKFFEDWVRGGA
TAEGFEAELAALAADPALDALDRAFWLPRIEPALRWAAARITDPDGRVPVGVEARGEVAA
DGIVLHGKADRIDRDAEGQLAIVDYKSGGAPSAKAAFEKLDNQLGLLGLIAERGGFEGVP
AARVAALEYWSLRPDRRAEGAGKISCSYGPRSGLKSAEDAVRHAADALAELAGRFLLGDA
PFMPGETAGYGDYDQLMRRDEWFGRGESEL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaatctaaacccacaatctattccatcccggtccaccgtgccttcgccgatgcg
ctcgccgccgggctgctcgcgcgcttcgccgacggagcgctggggctcgccgacgggctg
atcctcctgccgagcaaccgcgcgcgcagcgccgtgcaggcggcgtttgtccgcgcgggc
gggcaggggctcctgatgccgcggctcgcggtgataggcgatgcagatctcgacgagtcg
gtcgggctcgcgctcgacgggatggacgaagatccgatcccgccggcgatcgacccgctg
cgccgccgcttgctgcttgcagagctgatcgagcgccacacgccctccggcgaaagcgcg
atcacgggcgctgccgctttccagctcgccgatggtcttgcgcgggtcatcgaccagctt
tgctatgaggaggtctcacccgctgccctggtcgatctcgaccttggtgcattggccgaa
cattggcagacctcgctcgagcggcttcgcttgcttgtcgaccattggcccgcggtgctc
gcgcgaacgggcagcatcgaccgggccgatcgccgcaaccggctgctcgacagggtcgcg
gccgagtggcgcgccgcaccgcctgcccgctttacggtcgcggcgggaatcacgaccgcg
gcgcctgccatcgcgcgcctcctgcggacggtctccgagctcgatcgcggcatggtcatc
ctgccgggcctcgaccaggggatggcggcggaggagtgggaggcgctcggaccgacgcgg
gcagatcccggcggaaaggcgcggccgctcgagacccacccccaatatcatctcaaactt
cttctcgaccgtatgggggcaagccgcgaggaggtcatgctgtgggaggccagctcgccg
ttcgatggcccgtccgcccgctcgccctttgtctcgctactcttcgcgcccgccgattac
acggcgcagtggcaggccgcgggagacctgtcggacgctatcgtcgggatttcaggcgcc
gtatttgccgatgacgggcaggaggcgcagggtatcgccctgctgatgcgcgaggcgctg
gaaacgccggggcgcaccgcggcgctggtcactcccgaccgtggcctcgccgagcgcgtt
gcatcggcgctcgcccgctggggcatcgcggtcgacgatagcgcgggccagcccttgtcg
cgcaccccgcctggggcgctgctcttgctgctcgccgacctcgcggcggcattcgatcct
gtcgccctcgtctcgctgcttggtcacccgctggtgaaagcgagcgaggggcggagcgaa
tggcttgatcaggtccggcggctcgatctcacgctgcgcgagcccgggctgcagccgggc
tgggccggcgtgagccagcgtatcgcagagcgctttgccgaccccgcggcgcgcggccac
gggcacgcggtgcagctccaaccctggtgggagaaggtcggggcggcgctgggggccgcg
ctcgcgcccttcgcgtcggggccgacgccgcccgcaacgctgctcgctgcgctccagatc
gcgcttgaaacgctcgccggagatgctgtctggacgggccccgcagggcggatgctcgca
gggctgttcgacgagtgggcgctcgcgcgcggcgacgggcccgcgttcgtcgacccgggt
gatttcccggcgatgctcgggcaattgctcgggcagaccagcgtgcggcccccctatggc
gggcatccgcggctatttatctggggactgctcgaagcgcggctgcagcgcgcggatctc
atgattctcggcgggctcgacgaagggcgctggcccgcggcgacccagcccgacccatgg
ctcgcgccgggtattcgccgcctgcttggcctcccggctcccgagcggcaacaggggatg
gcggcccatgatttcgcgggcgcccttggcgcaggcaatatcgtggtgacccgggccgag
cgcagcggcggcgatccagcggtcgcctcgcgcttctggttgcgactgctcgcactcgcg
ggcgaaatccccgaacccagacccggcggagtgccgctcacccggctcgcagccgagctc
gacacgccgcccggcgatccgcagccggtaccgcgtcccgccccgcggccggctgcagcc
gatcgaccgcgccggatcagtgtcaccgcggtggaccggctcgcgcgcgatcctttcgct
tactatgcgaatgcgatgctcggcctgtccgtgctcgatccgttgagcgccgcgcccgac
ccgcgctggcgcgggacgcgcgtgcacaagtttttcgaagattgggtgcgcggcggtgcg
acggcggaggggttcgaggccgaactcgccgcgctcgccgccgacccggcgctcgacgcg
ctcgatcgggctttctggctgccgcggatcgagccggcgctgcgctgggcagctgcccgg
atcacggaccccgacgggcgggtgcccgtcggggtcgaagcgcgcggcgaggtcgcggcg
gatggcatcgtgctccacgggaaggccgatcgcatcgaccgcgacgctgaagggcagctt
gccattgtcgactataagtccggcggcgcgccgagcgccaaggccgcgttcgagaagctc
gataatcagctgggtctgctcggtctgatcgccgaacggggcgggtttgagggcgtgccc
gcagcgcgagtggcggcgcttgaatattggagcttgcgccccgatcgacgcgccgaaggc
gcggggaaaatttcctgtagctatggaccgcgcagcggtctgaaaagcgccgaggacgcg
gtccgccacgcggccgacgctctggccgagcttgccggtcgcttcctgctcggcgatgcg
cctttcatgccgggcgagacagcgggttatggcgattatgaccagctgatgcgccgcgat
gaatggttcgggcgcggggagagcgagctatga
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