Sphingopyxis sp. 113P3: LH20_16695
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Entry
LH20_16695 CDS
T04069
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphp
Sphingopyxis sp. 113P3
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphp03016
]
LH20_16695
Enzymes [BR:
sphp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LH20_16695
Transfer RNA biogenesis [BR:
sphp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LH20_16695
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
BE_C
CNOT1_HEAT
Motif
Other DBs
NCBI-ProteinID:
ALC13599
UniProt:
A0A0M3QE03
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All DBs
Position
complement(3396914..3397531)
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AA seq
205 aa
AA seq
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MSVYFHEEDLPEGVLGPGPVAIDTETMGLNPLRDRLCLVQISDGTGDEHLVRFGPGSAYD
APVLKAILTDPDRLKLFHFARFDIAALQHALGVVTAPVYCTKIASKLVRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAILSEAQRDYAASDVRFLHAMKEVLDARLAREGRTHLAQA
CFDFLPTRAALDLAGWPEVDIFSHS
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatattttcacgaagaagacctgcccgaaggcgtattggggccgggccccgtc
gcgatcgacaccgagacaatgggtttgaacccgctgcgcgaccggctgtgtctcgtccag
atcagtgacgggacgggcgacgagcatctcgtccgcttcggtcccggcagcgcctacgac
gcccccgtgctcaaagcgatcctgaccgatcccgaccgtctgaagctttttcatttcgcg
cgattcgacatcgctgcgctccagcatgcgctcggggtcgtcaccgcacccgtttattgc
acgaagatcgcctcgaagctggtgcgcacctataccgaccgccacgggctcaaggaactc
gtacgcgaactgctcggtcaggaagtatcgaagcagcagcagtcgagcgactggggcgct
gcgatcctgagcgaggcgcagcgcgactatgccgcgagcgacgtgcgcttcctccacgcg
atgaaggaggtgcttgatgcccggctcgcgcgcgaaggccgcacgcatctggcacaagcc
tgcttcgatttcctcccgacgcgcgccgcgctcgaccttgcgggctggcccgaggtcgat
attttctcgcacagctag
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