KEGG   Sphingopyxis sp. 113P3: LH20_16695
Entry
LH20_16695        CDS       T04069                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
sphp  Sphingopyxis sp. 113P3
Brite
KEGG Orthology (KO) [BR:sphp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sphp03016]
    LH20_16695
Enzymes [BR:sphp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     LH20_16695
Transfer RNA biogenesis [BR:sphp03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    LH20_16695
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2 BE_C CNOT1_HEAT
Other DBs
NCBI-ProteinID: ALC13599
UniProt: A0A0M3QE03
LinkDB
Position
complement(3396914..3397531)
AA seq 205 aa
MSVYFHEEDLPEGVLGPGPVAIDTETMGLNPLRDRLCLVQISDGTGDEHLVRFGPGSAYD
APVLKAILTDPDRLKLFHFARFDIAALQHALGVVTAPVYCTKIASKLVRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAILSEAQRDYAASDVRFLHAMKEVLDARLAREGRTHLAQA
CFDFLPTRAALDLAGWPEVDIFSHS
NT seq 618 nt   +upstreamnt  +downstreamnt
atgagcgtatattttcacgaagaagacctgcccgaaggcgtattggggccgggccccgtc
gcgatcgacaccgagacaatgggtttgaacccgctgcgcgaccggctgtgtctcgtccag
atcagtgacgggacgggcgacgagcatctcgtccgcttcggtcccggcagcgcctacgac
gcccccgtgctcaaagcgatcctgaccgatcccgaccgtctgaagctttttcatttcgcg
cgattcgacatcgctgcgctccagcatgcgctcggggtcgtcaccgcacccgtttattgc
acgaagatcgcctcgaagctggtgcgcacctataccgaccgccacgggctcaaggaactc
gtacgcgaactgctcggtcaggaagtatcgaagcagcagcagtcgagcgactggggcgct
gcgatcctgagcgaggcgcagcgcgactatgccgcgagcgacgtgcgcttcctccacgcg
atgaaggaggtgcttgatgcccggctcgcgcgcgaaggccgcacgcatctggcacaagcc
tgcttcgatttcctcccgacgcgcgccgcgctcgaccttgcgggctggcccgaggtcgat
attttctcgcacagctag

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