Sphingopyxis sp. 113P3: LH20_18230
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Entry
LH20_18230 CDS
T04069
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH20_18230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphp03019
]
LH20_18230
03400 DNA repair and recombination proteins [BR:
sphp03400
]
LH20_18230
Enzymes [BR:
sphp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH20_18230
Messenger RNA biogenesis [BR:
sphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH20_18230
DNA repair and recombination proteins [BR:
sphp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH20_18230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ALC13898
UniProt:
A0A0M5IQD0
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All DBs
Position
complement(3688679..3690451)
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AA seq
590 aa
AA seq
DB search
MSADILLPLLKSTFGFDDFRGRQAEVVARVMAGEHTLAVMPTGAGKSLTYQLPAVALAGC
VVVVSPLIALMHDQLRGARAAGIRAASLTSVDADFADTRQAYRDGQLDLLYIAPERATGE
GFRALMEARAPALFAIDEAHCVSEWGHDFRPDYRLLRPLLDTFPGVPRLALTATADKHTR
EDILVQLGIPADGLVLAGFDRPNIRYRVGPRIGAARQLAEFIAANPGPGIVYCPTRDGTE
RMAAKLAAATGRSVAAYHAGLDAERRAQVQHDFVASEDGIVTATVAFGMGIDKPDVRFVA
HAGLPKSIESYYQETGRAGRDGDPAEALMLWGAEDFARARMRLGELPEARLAGERARLNA
LAALVETAECRRALLLRHFGEAPPEYCGNCDNCLDPPKQVDATVLAQKLLSAIYRTGQSY
GAAHIEAVLTGRGDDRIVSRGHDKLSVFGLVEGEEARLIKPLVRTLMAREALATTEHGGL
MFGPAGRAVMKGEVPVMIAEPPARRGKRAARGEQAANPIGDPLFEALRTARRELAAEAGV
PPYVVFHDAALRAMASARPSTRAELARIPGVGARKLESWGDAFLAVIRQF
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacatcctccttcccctcctcaaatccaccttcggtttcgacgatttccgc
ggcagacaggccgaggttgtcgcgcgggtcatggcgggcgagcatacgctggccgtgatg
ccgacgggggcgggcaagtcactgacctaccagcttcctgccgttgcgcttgccggctgc
gtggtggtggtctcgccgctcatcgcgctgatgcacgaccagcttcgcggtgcgcgcgcg
gcaggaattcgggcagcctccctgacgagcgtcgatgccgatttcgccgatacgcgccag
gcgtaccgcgatggtcagctcgaccttttgtatatcgcgccggagcgtgcaacgggtgaa
ggcttccgcgcgctgatggaagcgcgagcgcccgcattgttcgcgatcgacgaggcgcat
tgcgtgtcggaatggggacatgatttccggcccgattaccgccttctgcggcccctgctc
gatacctttccgggcgttccgcggcttgcgctgacggctaccgccgacaagcacacgcgc
gaggatattctggtccagctcggcatcccggccgacggcctggtgcttgcaggtttcgac
cggccgaacatccgttaccgggtcggtccgcgcataggcgccgccaggcagctggccgag
ttcatcgccgccaacccggggccgggaatcgtctattgcccgacgcgggacggcaccgag
cggatggctgcgaagctcgccgctgcgacgggacgttccgttgccgcctatcacgcgggg
ctcgatgccgagcggcgcgcacaggtccagcatgatttcgtcgcctcggaggatgggatc
gtcacggcgacggtggccttcggcatggggatcgacaagcccgacgtgcgctttgtcgcg
catgccgggctgccaaagtcgatcgaaagctactatcaggaaaccgggcgggccggacgc
gacggcgatcctgccgaggctctgatgctgtggggggccgaggattttgcgcgcgcgcgc
atgcggctgggcgagcttcccgaggcgcgcctcgctggcgagcgcgcgcgcctcaatgca
ctcgcggcgcttgtcgaaaccgccgaatgccgccgcgcgctgctgctgcgccatttcggc
gaggccccgcccgaatattgcggcaattgcgacaattgccttgaccccccgaaacaggtc
gacgcgaccgtgctcgcgcagaagctgctttcggcgatctatcgcaccggacagtcctat
ggcgcggcgcacatcgaggcggtgctgacgggtcgcggcgacgatcggatcgtgagccgc
ggccacgacaaattgtcggtctttggcctcgttgagggtgaggaggcgcggttgatcaag
ccgctggtgcgcacgctgatggcgcgcgaggcgctggcgaccaccgaacatggcgggctc
atgttcggcccggcgggacgtgcggtgatgaagggcgaggtgccggtcatgatcgcggag
ccgcccgcaaggcgggggaaacgcgcggcgcgcggcgagcaggcggcgaatcccatcggc
gatccgctcttcgaggcgctgcgcacggcgcggcgcgagctggcggcggaggccggggtg
cccccctatgtggtcttccacgatgcggcgctgcgcgcgatggcgagcgcgcgtccgtcg
acgcgcgctgaacttgcgcggattccgggcgtcggcgcgcgcaagctggagtcgtggggc
gatgcgtttctcgcggtgatccggcagttctaa
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