Sphingopyxis sp. 113P3: LH20_21695
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Entry
LH20_21695 CDS
T04069
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphp
Sphingopyxis sp. 113P3
Pathway
sphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH20_21695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphp03019
]
LH20_21695
03009 Ribosome biogenesis [BR:
sphp03009
]
LH20_21695
Enzymes [BR:
sphp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LH20_21695
Messenger RNA biogenesis [BR:
sphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LH20_21695
Ribosome biogenesis [BR:
sphp03009
]
Prokaryotic type
rRNA processing factors
LH20_21695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ALC14584
LinkDB
All DBs
Position
complement(4401928..4404555)
Genome browser
AA seq
875 aa
AA seq
DB search
MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEAAMRAEEDLDELEGDVADVED
HDDDNGDAPAPVTIGEEAEDAEDAEEGSESEAGDGEQASEEGKDGRGDRRRRGRDGRKGG
RGRGRGRRSDEDDGENRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAG
RYCVLMPNTMHGGGISRKISNGADRRKLKAMIDELNLPPTMGCIVRTAGMSRTKTEIKRD
FDYLARLWDEIREKTLQSSAPALIHSDSDLVKRAIRDIYHKDIEEVLVEGDEGYKAAKQF
MKLLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDI
NSGRSTREHNIEQTALNTNLEAAHEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMK
EALKNDRARIQIGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSAL
RLIEEEAARGKGSKITLRASQEATFYLLNEKRRELHEIEELYGVSVEILPDGETEGARMA
IEIGGPPPVARRSFAPIEVIEDEEDEDIVEEEEGEEAGDDEHPARRARDESEGEGEGRKR
RRRRRRGRRGRRDEEGGESVEGDAVESEGEPEQIDVTPVEETAPAEVEAPAEIAAEPEEG
DAKPKRRRGGRGRKAKTEEAEAESMTLAAEAPVEAESVEAAAEEAPVAPEKPKRKRAPRK
AKAAEAEPATEETEAPRAEAALAEAPAAEAVEAEPAAKPVRKRASRSKKAAAAEAAPEAE
SLEAATVVAADETPAADEATGGEPRRGWWQRTFGN
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgttgatcgacgcgcggcaccgggaagaaacccgggtcgccgtcacc
aagggaaaccgcatcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggc
aacatctatctggccaaggtcacccgcgtcgaaccttcgttgcaggcggcgttcgtcgaa
tatggcgggaaccgccacggcttcttggccttcagcgaaatccaccccgactattatcag
attccgaaggaagaccgcgaagcgctgctgcgcgaagaagcggagcacgctgccgaggcg
gcgatgcgcgccgaggaggatctcgacgaactcgaaggcgatgtcgccgacgtcgaggac
catgacgacgacaatggcgacgcccccgcccccgtaaccatcggcgaagaggccgaggac
gccgaggacgccgaggagggcagcgagtccgaagccggcgacggcgaacaggcctccgag
gaaggcaaagacggacgcggcgaccgccgccgccgcgggcgcgacggccgcaagggcggc
cggggccgcgggcgcggccgccggagcgacgaagacgacggcgaaaaccgcatgtcgctg
cgccgccgctacaagattcaggacgtcattcgccgccgtcaggtgatgctggtccaggtc
gtcaaggaagagcgcggcaacaagggcgccgcgctgaccacctatctctcgctcgccggc
cgctattgcgtgctgatgccgaacacgatgcacggcggcgggatcagtcgcaagatttcg
aacggcgccgatcgccgcaagctgaaggcgatgatcgacgagctcaacctgccaccgacg
atgggttgcatcgtgcgtaccgccgggatgagccgcaccaagaccgagatcaagcgcgac
ttcgactatctcgcgcgcctgtgggacgaaatccgcgaaaagacgctgcagtcgagcgcg
cctgcgctgattcattcggacagcgacctcgtgaagcgcgcgatccgtgacatctatcac
aaggatatcgaggaagtgctcgtcgagggcgacgagggctacaaggcagcgaagcagttc
atgaagctgctgatgccgagccacgcccggcgcgtgaagcaatatgcggatccggtctcg
ctctatcagcgctatggcgtcgaggatcagctcgctggaatgctcaaccccgtcgtgcag
ctgaaatcgggaggctatctcgtgatcaacccgaccgaggccctagtgtcgatcgacatc
aactcgggccggtcaacgcgcgagcataatatcgagcagaccgcgctcaacaccaacctc
gaggccgcgcacgagatcgcgcggcagctgcgcctgcgggacatggcggggctgatcgtg
atcgacttcatcgacatggatcacggttcgaacgtccgcaaggtcgagcgcgccatgaag
gaagcgctgaagaacgaccgcgcgcgcatccagatcggccgcatttccggctttggtctg
atggagatgagccgtcagcggctgcgcaccggcgtactcgaagcctcgacacggccctgt
ccgcattgcgagggcacgggtctcgttcgcaccgcatcgtcggcgggtctcagcgcgctg
cgtctgatcgaggaggaggccgcgcgcggcaagggcagcaagatcacgttgcgcgccagc
caggaagcgaccttctacctcctcaacgagaagcgccgcgaactgcacgaaatcgaggag
ctttacggcgtcagcgtcgaaatcctgcccgacggcgagaccgagggcgcacgcatggca
atcgagattggcggtcccccgccggtcgcgcgccgcagcttcgccccgatcgaagtgatc
gaggacgaggaagacgaggatatcgtcgaggaggaagaaggcgaggaagctggggatgac
gaacaccccgcccgccgcgcgcgtgacgagagcgagggagaaggcgagggccgcaagcgc
cgccgccgccgccgccgcggccgccgcggccgccgcgatgaagagggaggcgaatcggtc
gaaggcgacgctgtggagagcgagggcgaaccagagcagatcgacgtcacccccgtggag
gaaaccgcccctgccgaagtcgaggccccggccgaaatcgcagccgaacccgaggagggc
gatgcgaagccgaagcgccgccgcgggggccgcgggcgcaaggcgaagaccgaggaggcc
gaggctgaaagcatgaccctggctgccgaagcaccagtcgaggccgagagcgtcgaggca
gcggcggaggaggcaccagtcgccccggagaagcccaagcgcaaacgcgctccgcgcaag
gccaaagcggccgaagcagagcccgcaactgaggaaaccgaagcgccccgggccgaagcc
gcgctcgcagaagcccccgccgccgaagccgtggaggccgaaccggcggccaagccggtg
cgcaagcgcgccagcaggagcaagaaggccgcggctgccgaggcagcgcccgaggcggaa
tcgctcgaagccgccacggtggtcgccgcggacgagacgccggcggccgatgaggcgacc
ggaggcgagccccgccgcggatggtggcagcgcaccttcggaaactga
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