Sphingopyxis sp. QXT-31: BWQ93_02520
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Entry
BWQ93_02520 CDS
T04913
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphq
Sphingopyxis sp. QXT-31
Pathway
sphq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BWQ93_02520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphq03400
]
BWQ93_02520
Enzymes [BR:
sphq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BWQ93_02520
DNA repair and recombination proteins [BR:
sphq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BWQ93_02520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APZ97491
UniProt:
A0A1P8WTX3
LinkDB
All DBs
Position
complement(516950..518944)
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AA seq
664 aa
AA seq
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MRHVVAPCFGDENGNAWRGGQVAPPPGTIAAPDGLESMARKTAAPSPADRAPSSKRGERK
AAAPPPFRPVQLATLVDSVPAGRGWVHEMKYDGYRLLIAVGGGEARAYTRSGVDWSERFA
PLLAEAAKLKVDSALIDGEAVVLDAEGRSSFQSLQNALKSAPDSIDYFAFDLLALDGEDL
TALPLLDRKAHLAKILPKASRHIRYSDHIAGSGEKLLESFCAAGLEGVISKKADARYVGA
RTGSWLKTKCIKRQEFVIVGWTPSDTSRAFRSLMLGVHENGALRYAGKVGTGFDTEELFR
LQAMMKPLERKEPTVKAPRTETRGAHWIEPKLVAEIAFTEMTNDGTLRHPSYLGLREDKN
PEAVVIESEAAVAEVAHASPVPISNPDRVIFPEAGLTKGELAEYYAALAPIMLPWAGSRP
ISLVRCPQGRAKKCFFQKHDAGSFGDAVKHVAIEEKDGDNQPYLYMDTPEGLMTCVQMGT
IEFHGWGARIEDVEKADRLVFDLDPDVGLDFETVRSAAFQFRDILKQMGLETFPMLTGGK
GVHVIAPLVPRAEWPEVKDFAHRLARAVAQMDSDRFTAALPKAQRKGRIFVDYLRNQRGA
TAVMPYSARAREGAPVAAPISWKEMETIDKPSHFRITDAKELLKRASLKALQGWGRADQT
LPDL
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
attcgccatgttgtagctccatgtttcggggacgaaaatgggaacgcatggcggggcggg
caagttgccccgccaccgggaacgatcgcggcgccggatggtcttgagtccatggccaga
aagaccgccgcaccgagccctgcagaccgcgccccctcttcgaagcgcggcgaacgaaag
gctgcggctcccccgccctttcgtccggtccagctggcgacgctcgtcgacagcgttccc
gccggcaggggctgggttcacgagatgaaatatgacggctaccgcctgctgatcgcggtc
ggcggcggcgaggcccgcgcctatacgcgctcgggtgtcgactggtcggagcgcttcgcg
ccgctcctcgccgaggccgcaaagctgaaggtagacagcgcgctgatcgacggtgaagcg
gtcgtgctcgatgctgaaggccgctcaagcttccagtcactgcaaaatgccctgaagtcc
gcgcccgatagcatcgactatttcgccttcgatctgctcgcgctggacggcgaggatctg
accgccctccccctcctcgaccgcaaggcgcatcttgccaaaattcttcccaaggcctcc
cggcatatccgctactcggatcatatcgcgggcagcggcgagaagctgctcgagagtttc
tgcgccgcgggtctcgaaggggtcatctcgaaaaaggccgatgcacgctatgtcggcgcg
cgcacgggaagttggctcaagaccaagtgcatcaagcggcaggagttcgtcatcgtcggc
tggacgccctcggacacgtcgcgcgcgttccgctcgctgatgcttggcgtccatgagaat
ggcgcgctgcgctacgcgggcaaggtcgggaccggtttcgataccgaggagctcttccgc
ctccaggcgatgatgaagccgctcgaacgaaaggagccgacggtgaaggcgccccgcacc
gagacgcgcggcgcgcactggatcgagccgaagctcgtcgccgagatcgccttcaccgag
atgacgaacgatggcacgctccgccacccgagctatctcggccttcgcgaggacaagaat
cccgaggcggtcgtcatcgagagcgaagcggcggtcgccgaggtagcgcacgcctcgcca
gtaccgatcagcaaccccgaccgcgtcatctttcccgaggcggggctcaccaagggcgag
cttgcagaatattatgccgcactcgcgccgatcatgctgccgtgggcgggttcgcgcccg
atcagcctcgtgcgctgtccgcagggccgcgccaagaaatgcttcttccagaaacatgat
gccggaagcttcggcgatgcggtgaaacacgtcgcgatcgaggagaaggatggcgacaac
cagccctatctctatatggacacgcccgagggcctgatgacctgcgtccagatgggcacg
atcgaattccatggctggggcgcgcgcatcgaggatgtcgagaaggccgatcggctcgtc
ttcgatctcgatcccgacgtcggtctcgatttcgagacggtccgcagcgccgccttccag
ttccgcgacatcctgaagcagatgggcctcgagaccttcccgatgctcaccggcggcaag
ggcgtccatgttatcgccccgctcgtgccgcgcgccgaatggcccgaggtcaaggacttc
gcgcaccggctcgcccgcgccgtcgcccagatggattccgaccgcttcaccgccgccctc
cccaaggcgcagcgcaagggccggatcttcgtcgattatctccgcaaccagcgcggcgcg
actgcggtgatgccctattcagcgcgggcccgcgaaggcgcgccggtcgccgcgcccatc
agctggaaggaaatggagacgatcgacaagccgtcgcatttccgcatcaccgacgcgaag
gagcttctgaagcgcgcgagcctcaaggcgctgcaaggctggggccgcgccgatcagacg
ctgcccgacctgtga
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