Sphingobium sp. RAC03: BSY17_2345
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Entry
BSY17_2345 CDS
T04461
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphr
Sphingobium sp. RAC03
Pathway
sphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY17_2345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphr03019
]
BSY17_2345
03009 Ribosome biogenesis [BR:
sphr03009
]
BSY17_2345
Enzymes [BR:
sphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY17_2345
Messenger RNA biogenesis [BR:
sphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY17_2345
Ribosome biogenesis [BR:
sphr03009
]
Prokaryotic type
rRNA helicases
BSY17_2345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOF96714
UniProt:
A0A1B3MUH7
LinkDB
All DBs
Position
complement(2393948..2395738)
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AA seq
596 aa
AA seq
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MAFDTLPPILAQALTTKGYETLTEVQASVIEPEAVGRDMIVSAKTGSGKTVAFGLAMAGE
LLNEEGRLPPPAWPLALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDAARERKAL
AQGAHIVVGTPGRLRDHLERGALDLSALKTAVLDEADEMLDMGFREDLEGILDATPDGRR
TLLFSATMPKPIVALARRYQKDALQIATTSTERGHGDISYQAMTVAPSDIENAVVNLLRF
HEAETAMLFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVAT
DVAARGIDLPTLTLVVHVEIPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVEGMLK
GAKIPVEWTSAPSKEAIAAQDAERLRTRLLEPMELEESDWALGGELLEAKSAKEIAAMLV
RSARAALPAPEELLDGSDAPARREGPRPGFEDTQWFRMNIGRTQNADPRWILPLICRRGH
VSRGDIGAIRITATDTMFEIPKAISAKFLAAVRRTGEAGDEGADVMFDPINGAPREEARG
NRKQLRPANGDRPNRSGPPRGGPGAGSRGGASPHSPRPFKGAGAGGPRKGPPRSRG
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgataccctcccccccatcctcgcccaggcgctgacgaccaagggttatgaa
accctgaccgaagtgcaggcatccgtgatcgaacccgaagcggttggccgcgacatgatc
gtgtcggctaagaccggatcgggcaagaccgtcgccttcggcctcgccatggcgggcgaa
ctgctgaacgaagaaggccgcctgcccccaccggcctggccgctggcgctggtgatcgcg
ccgacgcgcgaactggcgctgcaggtcagccgcgagctggaatggctttacgccggtgcc
cgcgcgcgcatcgccacctgcgtcggtggcatggacgcagcgcgcgagcgcaaggcgctg
gcccagggcgcacatattgttgtcggcacgcccggccgtctgcgcgaccatctcgaacgc
ggcgcgctcgacctgtcggcgctcaagaccgccgtgctggatgaagccgacgaaatgctc
gacatgggcttccgcgaagatctggaaggcattctcgacgccacccccgatggccgccgc
accttgctgttctcggcgacgatgcccaagcccatcgtggcgctggcccgtcgctaccag
aaggacgcgctgcagatcgcgaccacctcgaccgagcgtggccatggcgacatcagctat
caagcgatgaccgttgccccgtccgacattgaaaatgccgtggtcaacctactgcgcttc
catgaggccgaaacggcgatgctgttctgcgccacgcgcgacaatgtccgccacctgcac
gccagcctgaccgagcggggctttgccgccgtcgcgctgtcgggcgagcatagccagaat
gaacgcaaccatgcgttgcaggccctgcgtgatcgccgcgcccgcgtctgcgtcgccacc
gacgttgccgcgcgcggtatcgatctgcccacgctgacgctcgtcgttcacgtcgaaatt
ccccgcgatgccgaaaccatgcagcatcggtcgggtcgtaccggccgcgctggcaagaag
ggcaccgccgtcctgatcgtcccctatccgcgccgtcgccgggtggaagggatgctcaag
ggcgccaagatcccggtcgaatggacgtccgcgcccagcaaggaagccattgcggcgcag
gatgccgaacggctgcgcacccgcctgctcgaacccatggaactggaagagtccgattgg
gcgctgggcggcgaactgctcgaagccaagagcgccaaggaaatcgcggcgatgctggtg
cgttcggcgcgcgctgccctgcctgcgcccgaagaactgctcgacggcagcgatgctccg
gcccgccgtgaaggaccacgccccggtttcgaggatacccagtggttccgcatgaatatc
ggccgcacgcaaaatgccgacccgcgctggatcttgccgctgatctgccgtcgcggccat
gtgtcgcgcggcgacatcggcgcgatccgcatcaccgccaccgacacgatgttcgaaatc
cccaaggcgatctcggccaaattcctggccgccgtccgccgcacgggcgaagcgggtgac
gagggcgcggatgtgatgttcgatccgatcaacggcgcaccgcgcgaggaagcccgtggc
aaccgcaagcagttgcgccccgccaatggcgatcgtcccaaccgcagcggcccgccccgt
ggcggtcccggtgccggatcgcgcggcggtgcgtcgccgcacagcccacgtcccttcaag
ggcgctggcgccggtggcccgcgcaagggtccgccgcgcagccggggctaa
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