Sphingobium sp. RAC03: BSY17_414
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Entry
BSY17_414 CDS
T04461
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sphr
Sphingobium sp. RAC03
Pathway
sphr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BSY17_414 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphr03021
]
BSY17_414 (rpoD)
Transcription machinery [BR:
sphr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BSY17_414 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Sec8_N
RXT2_N
Motif
Other DBs
NCBI-ProteinID:
AOF97368
LinkDB
All DBs
Position
425452..427509
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AA seq
685 aa
AA seq
DB search
MATKANSKNAAGAGDGGDEGGDAPLLDLNEASVKKLLARAKKRGYITYDELNNALPQDQM
SSEQIEDVMSALNDMGVNIVENEEASEDGEDQQREDDNDDANEAADDDDGSPRLVTEKKK
ETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWS
TALNNGEMQLREILDLDAMLSKDPAPESLEEGAEDDDGEISEKTAGPSFKEEEEPEEESA
DADEDEDGNERRPRRVEEEEEEDNTLSLAQMEETLKPIALEKFATITEIFRAFSAIQSSR
MLAMGTGEVLSQKDEDDYQELRESLTAQVESVQFHQQKIEYLVDQLYAYNRRLTALGGQM
LRLAERHKVSRKDFLDRYVNFELDDAWLDRVSGIDKKWAAFAAAEARAVERIRNEVSEIA
QATGMSLGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSR
QFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNA
IIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKMRSFLDQ
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcgaacagcaagaatgcggcgggtgcaggcgatggtggggatgaaggt
ggcgatgcgcccctgctcgacctcaacgaagcctcggtcaagaagctgctcgcccgcgcc
aaaaagcgtggctacatcacctatgacgagctgaacaacgccctgccgcaggaccagatg
tcctccgagcagatcgaagatgtcatgtccgcgctcaacgacatgggcgtcaacatcgtc
gaaaatgaagaagccagcgaagatggcgaggaccagcagcgcgaggacgacaacgacgac
gccaacgaggcggcggacgatgacgatggctcgccgcgcctggtcactgaaaagaagaag
gaaacggtcgatcgtaccgacgatcccgttcgcatgtatctgcgcgaaatgggcgcggtg
gaactgctcagccgtgagggcgaaatcgccatcgccaagcggatcgaggctggccgcgac
accatgatcctgggtctgtgcgaaagcccgaccaccttcaacgcgatcatcgaatggtcg
actgcgctcaacaatggcgaaatgcagctgcgcgaaatcctcgatcttgacgccatgctg
tccaaagaccctgccccggaaagcctggaggagggcgccgaggatgatgatggcgagatc
agcgagaagaccgctggtcccagcttcaaggaagaagaagagccagaggaagaatccgcc
gacgccgatgaggatgaggacggcaatgaacgccgcccccgccgcgtcgaagaggaagag
gaagaggacaacaccctctccctcgcccagatggaagaaacgctcaagccgatcgcgctg
gagaagttcgccaccatcaccgaaatcttccgcgccttctcggccattcaatcctcgcgc
atgctcgccatgggtacgggcgaagtgctgagccagaaggatgaggatgattatcaggaa
ttgcgcgaaagcctgaccgcgcaggtcgagagcgtccagttccatcagcagaagatcgaa
tatctggtcgatcagctttatgcctataaccggcgcctgaccgcgctgggcgggcagatg
ctgcgtctggccgagcgccataaggtcagccgaaaggacttcctcgaccgctacgtcaat
ttcgaactggacgatgcctggctcgaccgggtcagcggcatcgacaagaaatgggccgcc
ttcgccgccgccgaagcgcgcgcggttgaacgcatccgcaacgaagtcagcgaaatcgcg
caggcgaccggcatgtcgctcggcgaattccgccgcatcgtcaacatggtgcaaaagggc
gaacgcgaagcgcgcatcgccaagaaggaaatggtcgaagccaatctgcgcctcgtcatc
tcgatcgccaaaaaatacaccaatcgcggcctgcaatttctggatcttattcaggaaggc
aatatcggcctgatgaaggcggtcgataagttcgaatatcgccgcggctacaagttcagc
acctatgcgacctggtggatccggcaggcgatcacccgttcgatcgcggatcaggcgcgg
accatccgtatcccggtccatatgatcgagacgatcaacaagctggtccgcaccagccgc
cagttcctgcacgagcagggccgcgaaccgaccccggaagagatggccgagcgcctctcc
atgccgctggagaaggtgcgcaaggtgatgaagatcgccaaggagccgatctccctcgaa
acgccgatcggcgacgaggaagatagtcacctcggcgatttcatcgaggacaagaatgcc
atcatcccggtggatgccgcaatccaggcgaacctcaaggaaacggtcacccgcgtcctc
gccagcctaaccccgcgcgaagagcgcgtgctgcgcatgcgtttcggcatcggcatgaac
accgatcatacgctggaggaagtcggccagcagttcagcgtgacccgcgaacgcatccgt
cagatcgaggcgaaagcgctgcgcaagctcaaacacccctcgcgcagccgcaagatgcgc
agcttcctcgaccaataa
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