Sphingobium sp. RAC03: BSY17_658
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Entry
BSY17_658 CDS
T04461
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sphr
Sphingobium sp. RAC03
Pathway
sphr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSY17_658 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphr03021
]
BSY17_658 (rpoC)
03400 DNA repair and recombination proteins [BR:
sphr03400
]
BSY17_658 (rpoC)
Enzymes [BR:
sphr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSY17_658 (rpoC)
Transcription machinery [BR:
sphr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSY17_658 (rpoC)
DNA repair and recombination proteins [BR:
sphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSY17_658 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AOF98031
UniProt:
A0A1B3MY61
LinkDB
All DBs
Position
681389..685645
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPVAKTETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLNEDELLDAQDQYGEDAFTAG
IGAEAVKIMLMDLDLEGEKKILLEELATTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALFA
KAVTLHSKIISRVPQTDEAGNSYLKRYETTPGRMLLGECLPKAHKVPFDVVNRLLTKKDV
GDVIDEVYRHTGQKDTVLFADAIMALGFKHAFQAGISFGKDDMVIPDSKEGTVAETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSQCGDKVANAMMDEIRAQPKDPKTGRLAQINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AEDIVDTKDGSVIVPIGTLLDEALIVQIEAIGTQAVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLESMADGTIELRDMPT
ITDKQGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDTIKKGDRFAEWDPFTM
PVITERPGIVKYVDLIDGKTLAEQTDEATGIAQRVVTEHRGAARTKEDLRPRLTLLDDGS
GEAARYMLAVGATLSVEDGATVSAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQVDREEMDEINSKLAPGFLPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLIGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRASLRAASQIDLIAP
KTAAAEHAAELRQGPEAAIGDDPLGAVQGEDFTTQDAE
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgaccaacttcgccaatccggtcgccaagaccgagacgttcgaccagatc
cagatcggccttgcctcgccagagcgcatccggtcctggtccttcggcgagatcaagaag
cccgaaaccatcaactatcgcacgttcaagcccgaacgcgatggcctgttctgcgcgcgc
atctttggtccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaagtat
aagggcatcgtctgcgagaagtgcggtgtcgaagttaccgtgagcaaggtgcgccgcgag
cgcatgggccatatcgaactggccgcgccggttgcgcatatctggttcctgaaatcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagttgaagcagctggagcgcgtcctttac
ttcgaaagctatatcgtcaccgagccgggcctgaccccgctggagaaatatcagcttctc
aatgaagacgaactgctcgacgcgcaggatcaatatggcgaggacgccttcaccgccggg
atcggcgcggaagcggtcaagatcatgttgatggatctcgaccttgagggcgagaagaag
atcctgctcgaagagctggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcctggaatcgggcaaccgtcccgaatggatgatcctg
gacgtcgttcccgtgattccaccagagctgcgcccgctggtgccgctggacggcggccgc
ttcgcgacgtcggatctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgcttg
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagcggtcgacgccctgttcgacaatggccgtcgtggccgtgtcatcaccggtgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggtcct
gagctgaagctgcatcagtgcggtctccctaagaagatggcgctcgaactgttcaagccg
ttcatctacgcgcgtctggacgccaagggtctgtccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaagtgatccgcgagcat
cccgtgatgctgaaccgtgcgcccacgcttcaccgtctgggcatccaggcgttcgaaccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgatggcgatcagatggccgtccacgttccgctgagccttgaggcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgccagcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcatctattatctgtcgatggagcgcgaaggc
gagccaggtgaaggcatgttgctcgccgacatgcaggaagtgcatcaggcgctgttcgcc
aaggccgtgaccctgcacagcaagatcatcagccgcgtgccgcagaccgacgaggcaggc
aacagctacctcaagcgttacgagacgacgccgggccgcatgttgctgggcgaatgtctg
ccgaaggcgcacaaagtgccgttcgacgtcgtcaaccgcctcctcaccaagaaggatgtg
ggcgacgtgatcgacgaggtttatcgtcacaccggccagaaggacacggtgctgtttgcc
gacgccatcatggcgctgggcttcaagcatgcgttccaggcaggcatttcgttcggcaag
gacgacatggtcattccggactcgaaggaaggcacggttgctgaaaccaaggcgctggtg
gccgactatgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcagtgcggcgacaaggtagcgaacgccatgatggacgagatc
cgcgcccagcccaaggaccccaagacgggccgtctggcacagatcaactcgatctatatg
atggcgcactccggtgcccgcgggtctcaggcgcagatgaagcagctggccggtatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctggcc
gacaccgccctcaagacggcaaattcgggttacctgacccgccgtctggtcgacgtcagc
caggattgcacgatcgtcgaggaagattgcggcaccgaaaaggcgctggagatgaaggcg
atcgtccagggcggcagcgtcatcgcgtcgcttggcgaacgtatcctgggccgtaccacg
gccgaggacatcgttgacaccaaggatggttcggtcatcgtgccgatcggcacgctgctc
gacgaagcgctgatcgtgcagatcgaggcaatcggtacgcaggcggtcaagatccgcagc
ccgctgatctgcgagagcaagatgggcgtctgtggcaaatgctatggtcgtgaccttgcc
cgcggcaccccggtcaatatcggcgaagcggtcggcgtcattgcggcgcagtccatcggc
gaaccgggtacgcagctgaccatgcggaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaatcgatggcggacggcacgatcgaactgcgtgacatgccgacc
atcaccgacaagcagggccgccgcctgagcctcgcccgcaacggcgagatcgcgatcatc
gacagcgaagggcgcgaacgcgaaacccatcgcctgccttatggtgccaccatcctgttt
gcagatggcgacacgatcaagaagggcgatcgctttgcggagtgggatccgttcaccatg
ccggtgatcaccgagcgtccgggtatcgtcaaatatgtcgacctgatcgacggcaagacg
ctggccgaacagaccgacgaagcgacgggcatcgcccagcgcgtcgtcaccgaacatcgt
ggtgccgcgcgcaccaaggaggatctgcgtccgcgtctgaccctgctggacgatggttcg
ggcgaggctgcccgctatatgctggcggtcggtgcgaccctgtcggtcgaagatggtgcc
acggtgtcggccggtgacgtgctggcgcgtgtcagccgtgaagcggccaagacccgcgac
atcacgggcggtctgccgcgcgtggcggagctgttcgaagcgcgcaagcccaaggacaac
gccatcatcgccaaggtgtcgggccgcgtccagttcctcaaggattataaggcgaagcgc
aagatcgccatcaatcctgaggatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgtccaggaaggcgatttcgtcaagcgcggcgataatctgatcggcggt
tcgcccgatccgcatgatattctcgaagtgctcggcatcgagcccctggcagaatatctg
gtcgccgaaatccaggaagtctatcgtctgcagggcgtgaagatcaacgacaagcatatc
gagacgatcgttcgtcagatgctgcagaaggtcgagatcatcgagtccggcgacaccacc
ttgctggtgggcgaacaggtcgaccgtgaggaaatggacgagatcaacagcaagctggca
ccgggcttcctgcccgccgctggcaagcccgtgctgcttggcatcaccaaggcttcgctg
cagacccgttcgttcatctcggctgcgtcgttccaggaaaccacccgcgtcctcaccgag
gcggcggttcaggggaagaaggacacgctcatcggcctgaaggaaaatgtcatcgtcggc
cgcctgatcccggcgggtacgggcgctggcatgaaccggatgcgggttgccgcttcgtcg
cgtgacgcagcgatgcgcgcctcgctgcgggccgccagccagatcgacctgatcgcgccc
aagacggcggcggccgaacatgccgccgaattgcgccaggggccggaagcggcgatcggt
gacgatccgctgggtgccgtgcagggtgaagacttcaccacgcaggacgcggagtga
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integrated database retrieval system
