Sphingosinicella sp. BN140058: ETR14_18905
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Entry
ETR14_18905 CDS
T05826
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphs
Sphingosinicella sp. BN140058
Brite
KEGG Orthology (KO) [BR:
sphs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphs03016
]
ETR14_18905
Enzymes [BR:
sphs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ETR14_18905
Transfer RNA biogenesis [BR:
sphs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ETR14_18905
Prokaryotic type
tRNA splicing ligases
ETR14_18905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QAY78371
LinkDB
All DBs
Position
4210376..4211602
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AA seq
408 aa
AA seq
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MTEQNFEVMAVEGGAPVKMWTKGVAVDPKARDQLSRAAKMPFVFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLHAADLPDSLEGIRSAIEQAVPHGRDVGRG
KRDKGSWGDPPPEIFGAWATLAERFKRIVDKYPKLEKTNNLVHLGTLGTGNHFIELCLDE
ADQVWVMLHSGSRGVGNAIGSFFIELAKQDMRRWFVNLPDENLAYFPEGTDHFDDYVEAV
GWAQDYAALNRRMMMTNVIRAIRTVIVKPFEAELEAINCHHNYVRRENHFGENVLVTRKG
AVRAAEGVMGIIPGSMGAKSFIVRGRGNKQAFDSCSHGAGRLMSRTEAKKRFTLDDHIVA
TEGVECRKDADVIDETPAAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcagaattttgaagtgatggcggtcgagggcggcgcgccggtgaagatgtgg
accaagggcgtcgcagtcgatccgaaggcgcgcgaccagctgtcgcgggcggcgaagatg
ccgttcgtgttcaagcacgtcgcggccatgccggacgtgcatgtcggcatcggcgccacc
gtgggatccgtgattccgacgaagggcgcggtgattccggccgcggtcggcgtcgacatc
ggctgcggcatgatggcggcccgcacctcgctccacgcggccgatctccctgacagtctg
gaagggatacgcagcgcaatcgagcaggcggtgccgcatggccgcgatgtcggccgcggc
aagcgcgacaagggcagctggggcgacccgccgccggagatcttcggcgcctgggcgacg
ttggccgagcgcttcaagcgcatcgtcgacaaatatccgaagctcgagaagacgaacaac
ctcgtccatctcggcacgctcggcaccggcaaccacttcatcgagctctgtctcgatgag
gcggaccaggtgtgggtgatgctccattcggggtcgcgcggcgtcggcaacgcgatcggc
agcttcttcatcgagctggcgaagcaggacatgcggcgctggttcgtcaatctgccggac
gagaatctcgcttatttcccggaagggacggaccatttcgacgattatgtcgaggcggtg
ggctgggcgcaggattatgcggcattgaaccgtcggatgatgatgaccaacgtgatccgc
gcgatccgaaccgtcatcgtcaagccgttcgaggccgagctcgaggcgatcaactgccac
cacaattatgtgcggcgggagaaccacttcggcgagaacgtgctggtcacccgcaagggg
gcggtgcgggcagccgagggcgtgatggggatcattcccggatcgatgggcgccaagagc
ttcatcgtccgcggccgcggcaacaagcaagcgttcgacagctgcagccacggcgccgga
cgattgatgtcgcggacggaggcgaagaagcgcttcaccctcgacgatcacatcgtcgcg
accgaaggcgtcgaatgccgcaaggatgcggacgtcatcgacgagaccccggcggcctac
aagccgatcgaagcggtgatggcggcacaggccgatctcgtcgagatcgtccacaccttg
aagcaggtggtgtgcgtgaagggctga
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