KEGG   Sphingobium sp. TKS: K426_00240
Entry
K426_00240        CDS       T04965                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
spht  Sphingobium sp. TKS
Brite
KEGG Orthology (KO) [BR:spht00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spht03400]
    K426_00240
Enzymes [BR:spht01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     K426_00240
    5.6.2.6  RNA 3'-5' helicase
     K426_00240
DNA repair and recombination proteins [BR:spht03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    K426_00240
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 T4SS-DNA_transf
Other DBs
NCBI-ProteinID: AMK21012
LinkDB
Position
1:45246..47681
AA seq 811 aa
MFSSYIPPMNQRLPEPLEQWFTLRGWTPRRHQLDMLTAARSGSHALLVAPTGAGKTLAGF
LPTLTDLIEKPGEGLHTLYVSPLKALAVDVRRNLLTPIEEMGLPIRVETRTGDTPSDRKA
RQRARPPQILLTTPESLSLLLSYSDSFLMFADLKTVIIDEVHAFATQKRGDILNLSLSRL
QSINPGLRRVALSATVADVDAYRAWLAPDGDINAVTPVIGEAGADPHVAILIPEGRIPWS
GHSGKYAARQVMEEIERRATTLVFCNTRGLAELIFQSLWSVNEANLPIAIHHGSLSIEAR
RKVEAAMAAGKLRALVATASLDLGVDWGNVDCVIQMGAPKGSSRLLQRIGRANHRLDTPS
EAILIPGNRFEYLEARAALDAVEAGERDADDFRPGSLDVLAQHVMGLACAAPFREEELLA
EIRSATPYGALTEEAFANVLHFIEGGGYALRAYDRFKRLTRDADGTWRVSHPRFIQQHRL
NAGIIVDQPALAVRFANGRKLGTVEEGFAATLSPGDCFFFSGAALEVVRMDTTDLIVRAT
SKSARIPSWGGTRMAMSTRLADRVRHFLAEPGQWSRFPDDVREWLEVQKYRSALPEPGQL
LIETFPHEGRHYLVCYSFEGWNAHQSLGMLLTRRMNAQGLMPMGFVSNDYALAVYGLKPI
TDPQSLFSADILDHEFVEWVEQSSLLKRAFRDVAVISGLIERQHPGKRKTGRQVTFSTDL
IYDVLRKYQPDHLLLKAAWADARARMTDVGRLGDLIDRASATMLHIELDRVSPLAVPVLI
LIGREQVAQHDVEDALLIEAEALVTEAMRTD
NT seq 2436 nt   +upstreamnt  +downstreamnt
atgttctcatcctacatccctcccatgaaccaacgcctacccgaacccttggagcaatgg
ttcaccttgcgcggctggacgccccgccgccaccagctcgacatgctgaccgccgcccga
tcgggcagccatgcgctgctcgtcgctcccaccggggcgggcaagacgctcgccggtttt
cttccgaccctgaccgatctgatcgaaaagccgggcgagggtctccacaccctctatgtc
tcgccgctcaaggctctcgccgtcgacgtccgtcgcaacctgctgacgccgatcgaggaa
atgggcctgccgatccgcgtcgaaacccgcaccggcgacacgccttccgatcgcaaggcc
cgtcagcgcgcccgcccgccgcagatcctgctcaccactccggaatcgctctccttattg
ctaagctattccgacagtttcctgatgttcgcggacctcaagacggtcatcatcgatgaa
gtccacgccttcgccacccagaagcgcggcgacattctcaatctctcgctctcccgcctc
cagagcatcaaccccggcctccgtcgggtcgccctgtccgccaccgtcgcggatgtcgac
gcctatcgcgcctggctcgcgccggatggggacatcaacgccgtcaccccggtcatcggt
gaggcgggcgccgacccccatgtcgcgatcctcatccccgaaggccgcatcccctggtcc
gggcattccggcaaatatgccgcgcggcaggtcatggaggaaattgagcgccgcgccacg
acgctggtcttctgcaacacgcggggtctggccgaactcatcttccagtcgctttggtcg
gtgaacgaagcgaacctgcccatcgccatccatcatggtagcctctccatcgaagcccgg
cgcaaggtcgaggcggcgatggcggcgggaaaattgcgcgccctcgtcgccaccgcctcg
cttgacctgggcgtcgactggggcaatgtcgattgcgtgatccagatgggggcgcccaag
ggcagctcccgcctgctccagcgcatcggccgcgccaatcaccggctcgatacgcccagc
gaagccattctcatccccggcaacaggttcgaatatctcgaagcccgcgctgcactcgac
gccgttgaggcgggtgagcgcgatgccgacgatttccgccccggcagcctcgacgtgctg
gcccagcatgtcatgggtctcgcctgcgctgcgccctttcgcgaagaggaattgctggcc
gaaatccgctccgccacgccttatggcgcgctgacggaagaggccttcgccaacgtcctc
cacttcatagagggcggcggctatgccctgcgcgcctatgaccgcttcaagcgcctgacc
cgtgacgcggatggcacatggcgcgtctcccacccgcgcttcatccagcagcatcgcctg
aacgcgggcatcatcgtcgatcagcccgcgcttgccgtccgcttcgccaatggccgtaag
ttgggcacggtggaggaggggttcgccgcgaccctaagccccggcgactgcttcttcttc
tccggcgccgcgctggaggtggtgcggatggacaccaccgacctgatcgtccgcgccacc
tccaaaagcgcgcgcatcccaagctggggcggcactcgcatggcgatgtccacgcgcctg
gctgatcgtgttcgccacttcctggccgaacccggccaatggtcccgcttccccgacgat
gtgcgcgagtggctggaggtgcagaaatatcgttcggctttgcccgaaccggggcaactg
ctcatcgaaacctttccgcatgaagggcgccattatctggtctgctacagtttcgaaggc
tggaacgcgcatcaatccctgggcatgcttctcactcgccgcatgaatgcgcaggggctg
atgccgatgggcttcgtgtccaacgactatgcgctcgccgtctatggcttgaagcctatc
acggacccgcaaagcctcttctccgccgacattctcgaccatgaattcgtcgaatgggtc
gaacagtcgagcctgctcaagcgcgccttccgcgacgtggcggtgatttccggcctgatc
gagcgccaacatcccggcaagcgcaagaccgggcggcaggtcactttttcgaccgacctc
atctatgatgtgctgcgcaaatatcagcccgatcatctgctgttgaaggccgcatgggcc
gacgcccgcgcccgcatgaccgatgtggggcgtctgggcgacctgatcgaccgcgcttcg
gccaccatgctgcatatcgaactcgatcgggtgagtccgctcgccgttcccgtgctgatc
ctcatcggccgcgagcaggttgcccagcatgacgtggaggacgccctgctgatcgaggcc
gaagccctggtgacggaggccatgcggacggattga

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