Sphingobium sp. TKS: K426_05095
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Entry
K426_05095 CDS
T04965
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K426_05095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_05095
Enzymes [BR:
spht01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
K426_05095
DNA repair and recombination proteins [BR:
spht03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K426_05095
Prokaryotic type
K426_05095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AMK21971
LinkDB
All DBs
Position
1:complement(1008046..1008744)
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AA seq
232 aa
AA seq
DB search
MSDTIKLDESWRAPLRGEFASPYMQGLKRFLEEEKAQGKRVFPKGSEYFRALDLTPLDKV
KVVVLGQDPYHGEGQAHGLCFSVKPGVRTPPSLVNIYKELQSDLGLRPPRHGFLEHWAGQ
GVLLLNSVLTVEMGKAASHQKRGWEQFTDAIIRLVNQKVEPVVFLLWGAYAQRKAEFVDG
TRHLVLKAAHPSPLSAHNGFLGCGHFSKANAFLDEKGRGSIDWGLPETVPVP
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacactatcaagctggacgagagctggcgcgcgccgctgcgcggggaattcgca
agcccctatatgcaggggctgaagcgctttctggaagaggagaaggcgcagggaaagcgc
gtctttcccaagggcagcgaatatttccgggcgctggacctgacgccgctcgacaaggtg
aaggtggtggtgctggggcaagacccctatcatggcgaggggcaggcgcatgggctgtgc
ttttcggtgaagccgggggttcggactccgccgtcgctggtcaatatctacaaggaattg
cagagcgatctgggtttgcgcccgccgcgccacggctttctggagcattgggcgggtcag
ggcgtgctgctgctgaacagcgtgctgacggtggagatgggcaaggccgcatcccaccag
aaacgcggctgggaacagtttaccgacgccatcatccggctggtcaaccagaaggtcgag
ccggtggtcttcctgctgtggggcgcctatgcgcagcgcaaggcggagtttgtcgacggg
acgcggcatctggtgctgaaggcggcgcacccctcccccctttcagcgcataacggcttt
ctgggctgcgggcatttttcgaaggccaacgcctttctggacgagaaagggcgcgggtcg
atcgactggggtctgcctgaaacggtgccggtgccatga
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