Sphingobium sp. TKS: K426_12505
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Entry
K426_12505 CDS
T04965
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spht
Sphingobium sp. TKS
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_12505
Enzymes [BR:
spht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K426_12505
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
K426_12505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AMK23436
UniProt:
A0A126RN48
LinkDB
All DBs
Position
1:2492571..2495546
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AA seq
991 aa
AA seq
DB search
MGDRTRPALFNIPAHRAFSDALVAGLLAQHGGDPMRLAQGMILLPNNRAVRSVSDAFVRK
SGGGLLLPRLVALGDADLGEQVGSALDPLGEDEAVPPAIAPMRRQMILARMVQQASAHPV
DAGQALQLAQALGTVLDQIQVERLSVTALADLTLSDELSQHWQTSLKLFGILLAQWPQEL
ARLGCIDLADRRNRLLDRVSARWAKAPPEGFVIAAGMSTTAPAIAALLRRIALLPKGAVV
FAGLDQEMDGDAWDAIGPFDADPLTGRAPAGHETHPQYALKRLLDRMSATRDDVALWRWG
SEHDARAVRGRNISNAMLPPRLTSRWRDLKTADRSLAGVEALEVATPGEEAQAIAIALRE
AVETPGRTAALVTPDRQLATRVSAHLKRWGIDADDSAGQPLSRLPPGTLLIAMAEALAER
FAPVALLTLLKHPLVMRGEGRLAWLEGVRGLDLLLRGPRPQAGIVGLDLLLGDREGEDRQ
RTLRARTRHWWAEARTLLEPLEQAFLAAPDLAGQLAVIREHAGRLSRDAVWAGHQGHAAA
DLFAEMEEAASEGPRQADIRALPALFDHLLGGLSVRPPQGGHPRISILGLIEARLVQTDL
MILSGLNEGTWPGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQILITRAR
RGSGGPAVASRFWLRLKAMTGPQWKSADRYAALAQAIDDAADHRPASRPAPVPPLSVRPK
VIPVTDVDRLKADPYAFYAKRILRLARLDPVDADAGPAWRGTAVHEILQQWAEAGSRDLA
DLEARARAMFDQPNVHPLLKALWQPRLIEAIRWIAAEVASDLAAGRKILSVEIDGRADIA
GVTLTGKADRIDLLPDGKLGIVDYKTGKPPSARQVKAGYALQLGLLGLIAEHDGFPGPHT
APVAGSFEYWSLAKKGDAFGYRESPVDPMGKRDKIITADFTSQVYAQFEDIAATYLLGSA
PFDAQVNPEVANYGDYDQLMRLEEWYGRDDG
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaccgcacccgcccggcgctgttcaacataccggcgcaccgcgccttttccgat
gcgctggtcgcgggcctcctcgcccagcatggcggcgatccgatgcggctggcgcagggc
atgatcctgttgcccaataatcgcgccgtccggtcggtcagcgacgctttcgtgcggaaa
tcgggcggcgggctgctattgccgcgccttgtcgcattgggtgatgccgatctgggcgaa
caggtcggcagcgcgctcgatccgctgggcgaggacgaggctgtgccgcccgccatagcg
ccgatgcgccgccagatgatcctggcgcggatggtccagcaggcatcggcgcacccggtg
gacgcggggcaggcattgcaactcgcccaggcgctgggcacggtcctcgatcagatacag
gttgagcggctttcggtcaccgcgctggccgatctcactttgtccgacgaactgtcgcag
cattggcagacctcgctcaagctgttcggcatcctattggcgcaatggccgcaggaacta
gcgcggctcggttgcatcgatctggcggatcgccgcaatcggctgctggatcgtgtgtcc
gcccgctgggcgaaggcgccgcccgagggcttcgtcattgccgcgggcatgtccacgacg
gccccggcgattgccgcgctgctgcggcggatcgcgctgctgcccaagggcgctgtagtc
tttgccggtctggatcaggagatggatggcgacgcctgggatgctatcggtccctttgac
gccgatccactgaccggccgggcgcccgcggggcatgaaacccatccccaatacgccctg
aagcgcctgctcgaccggatgagcgcgacgcgtgacgatgtggcgctctggcgctggggc
agcgagcatgacgcccgcgccgtgcggggacgcaatatttccaacgccatgctgccgccg
cgcctaaccagccgctggcgcgatctcaagacggcggatcgctcgctcgcgggggtggag
gcgctggaggtcgcgacacccggcgaggaggcgcaggccatcgccattgctctgcgcgaa
gcggtggagacgccgggccgcaccgccgctctggtgacgccggaccggcaattggcgacc
cgcgtgtccgcgcatctcaagcgctggggcatcgacgccgacgattccgccgggcaaccg
ctgtctcgcttgccgcccggaaccttgctgatcgccatggcggaagcattggcggaacgc
tttgcgccggttgcgttgctaaccctgctcaagcatccgctcgtcatgcgcggggagggg
cggctcgcctggctggagggcgtgcggggtctcgacctgctgctgcgcgggccaaggccg
caggcggggatcgtcggtctcgacctgctgcttggcgaccgcgagggtgaagatcggcag
cgcacgctgcgcgctcgcacgcggcattggtgggcggaagcccgcaccctgctcgaaccg
ttggaacaagcctttctggccgcgccggacctggccgggcagttggcggtcattcgcgaa
catgccggtcgcctgtcgcgcgatgcggtctgggccgggcatcagggccatgccgccgcc
gacctcttcgctgagatggaggaggcggctagcgaagggccgcgccaggccgacatacgt
gcgctgccagccctgttcgaccatcttctgggcgggctgtcggtgcgcccgccgcagggg
ggacatcctcgcatcagcatccttggcctgatcgaagcgcggttggtgcagacggacctg
atgatcctgagcggccttaacgagggtacatggccgggcttgcccgcgcccgatccctgg
ctggcgccccgcatccggcgggaaatcgggctgccgggactggaaagccggatcggcctt
gccgcccatgattttgcgagtgccttgggtgcgccgcaaatccttatcacgcgggcccgg
cgcggatcgggcggcccggcggtcgcttcgcgcttctggctgcggctgaaggccatgacg
gggccgcaatggaaaagcgccgatcgctatgccgcgctggcgcaagcgatcgatgatgcg
gcggaccaccggcccgccagccgccccgcgccggtgccgccgctgtcggtgcgcccgaaa
gtcattcccgtcaccgatgtcgatcggttgaaggccgacccttacgccttttacgccaag
cgcatcctgcgtctggcgcggctcgatccggtggacgccgatgccgggccggcctggcgc
ggcacggcggtacatgaaatcctccagcaatgggcagaggcgggcagccgcgacctggcc
gatctcgaagcccgtgcgcgggcgatgttcgaccagccgaatgtgcatcccttgctgaaa
gcgctctggcagccgcgcctgatcgaagcgatccgttggatcgccgccgaggtggcgagc
gacctcgccgctgggcgcaagatcctttccgtcgagattgacggccgtgcggacattgca
ggggtcacgctcaccggcaaggccgaccgcatcgacctgctgccggacgggaagctcggc
attgtcgactacaagaccggcaagccccccagcgcccggcaggtcaaggctggctatgcg
cttcagctcggattgctgggcctgatcgcggagcatgacggctttcccggtccccacacg
gcgcctgtggcggggagcttcgaatattggtcgctcgccaagaagggcgacgcctttggc
tatcgggaaagcccggtcgatccgatgggcaagcgggacaagatcatcaccgccgacttc
acctcccaagtctacgcgcagttcgaggatattgccgccacctacctcctcggttcggcg
cccttcgatgcgcaggtgaaccccgaagtcgcgaactatggcgattatgaccagctcatg
cggctggaggaatggtatggccgcgacgatggctaa
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