Sphingobium sp. TKS: K426_13145
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Entry
K426_13145 CDS
T04965
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03420
Nucleotide excision repair
spht03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K426_13145
03430 Mismatch repair
K426_13145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_13145
Enzymes [BR:
spht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K426_13145
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K426_13145
MMR (mismatch excision repair)
Other MMR factors
K426_13145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
DEAD
AAA_22
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AMK23562
UniProt:
A0A126RN96
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All DBs
Position
1:2616459..2618735
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AA seq
758 aa
AA seq
DB search
MTLPAPSPDDPPYLKDLNEPQREAVLTTEGSVLVLAGAGTGKTAALTARLAHLIATRRAY
PSEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFT
ILDTDDQLRLMKQLIQAEGIDEKRWPARQLGGLIDQWKNKGLTPEEIGAGESEAYANGRG
QKLYAAYQARLRDVNACDFGDLLLHVLTILKRHRDVLESYQQRFRYIMVDEYQDTNSSQY
LWLRLLAQTRKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGAKIVRLEQNYRSTPHIL
GAASGVIAENGNRLGKTLWTDIDVGEKVRVIGVWDGPEEARRVGDEIESIERSGQSLDEV
SILVRAQHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERI
VNVPKRGLGDKAVEKLHRLARAEGIPLALAAARILDTDEMTPQARRSLGAFIGDLARWRD
RAVQLPHAELARQILDESGYTAMLQAERTTESAGRLENLNELTRAMEEYETLGAFLEHVS
LVMDNEAQADERKITIMTIHAAKGLEFDTVFLAGWEEGIFPSQRALDEGGLNSLEEERRL
AYVAITRARKLCLILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSLSGGASLWRANW
SERADPFANVQRGTGRGPGWQRAQQSGQFVKEPVRIVEARASAVSLGNKGRDDMSLGLRV
FHQKFGYGTVAEIEGNKLEIDFETAGRKRVMDSFVQPA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgcccgctccctcgcccgacgatcccccctatctcaaggatctcaacgaaccg
cagcgggaagccgtgctcaccaccgaagggtcggtgctggtcctcgcgggcgccggcacg
ggcaagaccgccgccctcaccgcgcgtctggcccatctgatcgccacgcgccgcgcctat
ccttccgaaatcctcgccgtcaccttcaccaacaaggcggcgcgagagatgcgggagcgc
gtaggccgcatgatcggcccggcggtggaaggcatgccctggctcggcacgttccacgcc
atcgccgccaagatgctgcgccgccatgccgaactggtcggcctgcaatccaatttcacc
atcctcgataccgacgaccagcttcgcctgatgaagcagctcattcaggccgaaggaatc
gacgaaaagcgctggcccgcccgccaattgggcggcctcatcgaccagtggaagaataag
ggtctgacgcccgaggaaatcggcgcgggtgaaagcgaagcctatgccaatggccgtggg
cagaagctctacgccgcttaccaggcgcgcctacgcgatgtaaatgcttgcgatttcggt
gacttgctgctgcatgttctgacgatattgaagcgccatcgggacgttctggaaagctat
caacagcgcttccgctacatcatggtggacgaatatcaggacacgaacagcagccaatat
ctctggctccgcctgctcgcccagacgcgcaagaatatctgctgcgtgggcgatgacgac
cagtccatctatagctggcgcggcgcggaagtggccaatatccttcgcttcgaaaaggat
tttccgggcgcgaagatcgtccgcctggagcagaattaccgctcgaccccgcacatccta
ggcgccgcctccggcgtgatcgcggaaaatggcaaccggctcggcaagacactctggacc
gatatcgacgtgggcgagaaggtccgcgtcatcggcgtgtgggacggtccggaggaagcc
cggcgcgtcggtgacgaaatcgagtcgatcgagcgcagcgggcaatcgctggacgaagtc
tccatcctcgtccgcgcccagcaccagacccgcgagttcgaagaccgcttcatccagatc
ggcctgccctatcgcatcgtcggcggcttccgcttctacgaacgcgccgaaatccgcgat
gcgctcgcctatctgcgcctcgtcaaccagcccgccgacgacctcgccttcgagcggatc
gtcaacgtccccaagcgtggattgggcgacaaggcggtggaaaagctccatcgactcgcc
cgtgccgagggcattccgctggccctcgccgccgcccgcatcctcgacaccgacgaaatg
accccgcaggcccgccggtcgctgggcgcgttcatcggagatctcgcccgctggcgcgat
cgcgcggtgcagcttccccatgcagaactcgcccggcagatattggacgaaagcggctac
accgccatgctccaggccgaacgcaccaccgaaagcgcggggcgcctggaaaacctcaac
gaactcacccgcgccatggaggaatatgagacgctgggcgcgttccttgagcatgtctcg
ctggtcatggacaatgaagcgcaggctgacgagcgcaagatcacgatcatgaccatccac
gccgccaaggggctggagttcgacaccgtgttcctcgccggttgggaagaaggcattttc
ccctcccagcgcgccctcgacgaaggcggccttaattcgttggaggaggaacgccgcctc
gcctatgtcgcgatcacgcgggcgcggaagctgtgcctcatcctccatgccgccaaccgc
cgcatctacggccagtggaccagctccatcccttcgcgctttgtcggagaactgccgccc
gaacatgtggaggaggagagcagcctgtcgggtggcgcctcgctctggcgcgccaactgg
tcggaacgggccgatcccttcgccaatgtccagcgcggcaccggcagaggcccaggctgg
caacgcgcgcaacaaagcggccagttcgtcaaggaacccgtccggatcgtggaagcccgc
gcctccgccgtctcgctgggcaataaaggccgcgacgacatgagcctaggcctgcgcgtc
ttccaccagaaattcggctacggcacggtcgcggagatcgaaggcaataagctggagatc
gacttcgaaaccgcgggacggaagcgcgtcatggacagcttcgtccaaccggcctga
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