Sphingobium sp. TKS: K426_13285
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Entry
K426_13285 CDS
T04965
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spht
Sphingobium sp. TKS
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spht03032
]
K426_13285
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_13285
Enzymes [BR:
spht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K426_13285
DNA replication proteins [BR:
spht03032
]
Prokaryotic type
DNA Topoisomerases
K426_13285
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K426_13285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Poly_export
Lar_restr_allev
SHOCT-like_DUF2089-C
Motif
Other DBs
NCBI-ProteinID:
AMK23590
UniProt:
A0A126RMX0
LinkDB
All DBs
Position
1:complement(2647789..2650341)
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AA seq
850 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPAKDGSVDPDAGFAMQWENYGDKGK
QLKAITDEARKATRLILATDPDREGEAISWHVQEVLRAKKALPAKVDRVTFNAITKQAVT
EAMAQPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIESFVAQEYWSVAAEMEQGGQAFVARLVRWRGEKIERLTIGKEGDAMAAKADVEAGRF
TVEKVETKPVSRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIAERYDGGYLPEKPRQYQTKAKNAQEAHEAIRPTEFYRDKVGSGDHAR
LYDLIFKRALASQMASARLERTTIDLVDGTGQHGLRATGQVVIFPGFLALYEEGRDDTED
DDSKLLPRMATGDAPAKKKVMAEQHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVL
KDRDYVRIEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQAVL
EAFWRDFKPKTAEVMEQKPSDITAELDKFLEPMLFPPKADGSNPRACPMCGEGQLSLRGG
RFGAFIACSNYPECKFTRKFGQPGGKEGGEDSGPEVLGQHPETGQDIVRKSGRFGPYIEM
GEGKEAKRGSIPKDLPDGEMTLDWAVKLLSLPREIGLHPETGKPIVANIGRFGPYLLHDG
KYGRLSSTAEIFEVGMNSAVAKLADAANKGGRGSSSREPLKVLGKHPRTEAEIKLMAGRY
GPYVTDGTTNATLPKTVEQDALTLEEAAQLIDARAAAAPAKKGKKAPAKKAAAKKPAAKK
APAKKKVAAE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgttgaatcgcccgccaaggcgaagaccatcgagaaatatctgggt
ggcgatttccatgtgcttgcgagctatggtcatatccgcgacttgcccgccaaggacggg
tcggtcgatcccgatgcgggctttgccatgcagtgggaaaattatggcgacaagggcaag
cagctcaaggccattaccgacgaagcccggaaggcgacgcgcctgatcctggcgactgac
cctgatcgcgagggtgaggcgatcagttggcatgtgcaggaggtgctgcgcgccaagaag
gcgctgcccgccaaggtggaccgcgtgaccttcaacgcgatcaccaagcaggcggtgacc
gaggcgatggcgcagccgcgtgccttggatgaggatttgatcgacgcctatcgggcgcgg
cgggcgctcgactatctggtgggcttcaccctgtcgccagtgttgtggcgaaaactgccc
ggcgcgaaatcggcggggcgcgtgcagtcggtggcgctgcgcctggtcgtggagcgcgag
cgcgagatcgagagcttcgtcgctcaagaatattggtcggtcgcggccgagatggagcag
ggcgggcaggcttttgtcgcgaggctggtgcgctggcgcggcgagaagatcgagcggctg
acgatcggcaaggaaggcgacgccatggccgccaaggcggacgtggaggccgggcgtttc
accgtcgagaaggtcgagaccaagccggtttcgcgcaatcctccgccgcctttcacgact
tcgacgctccagcaggaggcggcgcgcaagctcggcttctcggccagccatacgatgcgg
atcgcgcagcagctctatgaggatggcgcgatcacttacatgcgtaccgatggcgtgcag
atggacggcagcgccatttccgccgcgcgcaaggcgatcgcggagcgctatgacggcggc
tatctgcccgaaaagccgcgccaatatcagaccaaggcgaagaatgcgcaggaagcgcac
gaggccattcgcccgaccgaattttatcgggacaaggtggggtcgggcgatcatgcgcgg
ctttacgacctgatcttcaagcgggcgctggcgagccagatggcttcggcacggctggag
cggacgacgatcgatctggtggatggcaccggacagcatggcctgcgcgcgacgggacaa
gtcgtgatcttccccggcttcctggcgctttacgaagaaggccgggacgacacggaagac
gatgacagcaagctgctgccgcgcatggcgacgggcgacgcgccggccaagaagaaggtg
atggccgagcagcatttcacgcagccgccgccgcgctattcggaagcgagccttgtgaaa
aagctggaggaattggggatcgggcgtccgtccacctatgcctcgacgcttcaggtgctc
aaggaccgcgactatgtgcggatcgagaagaaccgcttcttcgcggaggagagcgggcgg
ctggtgacggccttcctcgaacgtttcttcgagcgttacgtgtcctatgacttcacggcg
ggccttgaagatgagctggacgagatttccggcggccgtgcccagtggcaggcggtgctg
gaagccttttggcgcgacttcaagccaaagaccgccgaggtgatggagcagaagccttcc
gacatcactgccgaactggacaagttcctggagccgatgctgttcccgcctaaggcggac
ggcagcaatccgcgtgcctgccctatgtgtggcgaagggcagttgtcgctgcgtggcggg
cgttttggcgcgttcatcgcctgttccaactatcccgagtgcaaatttacgcgcaagttc
gggcagccgggcggcaaggaaggcggcgaggatagcgggccggaggtgctgggccagcat
cccgaaaccgggcaggacatcgtcaggaagtccgggcgcttcggtccctatatcgagatg
ggcgagggcaaggaggccaagcgcggctccatccccaaggatttgcccgatggtgaaatg
acgctcgactgggcggtgaagctgctcagcctgccgcgtgaaattgggctgcatccggag
acgggcaagccgatcgtcgccaatatcgggcgcttcgggccttatctgctgcatgacggc
aaatatgggcggctctcctccaccgccgagattttcgaggtgggcatgaacagtgccgtg
gccaagctggccgatgcggcgaacaagggcgggcgtggctcatcctcgcgggagccgctc
aaggtgctgggcaagcatccgcgcacggaggcagagatcaagctgatggcggggcgctat
gggccttatgtgaccgacggcacgaccaatgcgacgctgcccaagaccgtcgagcaggat
gccttgacgctggaggaggcggcgcaattgatcgatgcgcgggctgctgcggcgcctgcg
aagaaggggaagaaggcgcctgcgaaaaaggctgcggcgaagaagcctgctgccaagaag
gctccggccaagaagaaggtggcggcggaataa
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