Sphingobium sp. TKS: K426_14010
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Entry
K426_14010 CDS
T04965
Name
(GenBank) putative helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K426_14010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spht03019
]
K426_14010
Enzymes [BR:
spht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K426_14010
Messenger RNA biogenesis [BR:
spht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K426_14010
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
ChuX_HutX
Motif
Other DBs
NCBI-ProteinID:
AMK23734
UniProt:
A0A126RNS7
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All DBs
Position
1:complement(2813681..2815066)
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AA seq
461 aa
AA seq
DB search
MQFTDLGLAEPILKALAAKKYALPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFMKLSVEVVFGGVPINKQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER
QNLFFSATMPGEIEALAAQFLRDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTVR
SEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGQVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLKAIE
RTAKVKLEIVPLPENFVEAVRNMPKAAPPRKGREQTPEQKAKRADGQRRYQDQQKQPRGN
AERAHRPDGEAGQPAKKNFRRRRGGSGVGAHKGAVQRTGGR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaccgaccttggccttgccgagccgatcctgaaggcgctcgccgccaagaaa
tatgctttgcccacccccatccaggcgcaggccattcccgttttgctgaagggcaaggat
ctgtgcggcatcgcgcagaccggcaccggcaagacggcggccttcgcgctgccgagcctt
gaccatttcgcccgcaaccccaaaccgacgccgcttcagggctgccggatgctggtgctt
tctcccacgcgcgaactggcggcgcagatcgcgcagagcttccgcgactatggccgtttc
atgaagctgtcggtggaggtcgtgtttggcggcgtgccgatcaacaagcagatccgcgca
ctgggccggggcgtcgatatcgtcgtcgcgacgccgggccgtctgctcgacctgatcgac
cagcgggctttcaccatcaaggataccgagattttcgtcctcgatgaagccgaccagatg
atggacatgggcttcatccatcccttgaaacgcatcgccaagctgctgcccaaggaacgg
cagaacctcttcttctccgccaccatgccgggtgagatcgaggcgctggccgcgcagttc
cttcgcgatccggtaaaggtcagcgtcgcgccgcagtcgaccacggcggagcgggtccgt
cagcaggcgaccttcgtcaatcagatggagaagcaggcgttgctcaacctgacggtcagg
agcgaggatatcgaccgcgcgctgatcttcacgcgtacgaaacatggcgcggaccgcgtc
gtgcgctttctggaaggggcgggaattcaggccgtcgccatccatggcaacaagagccag
gcgcagcggaccaccgccttgcaggctttccgccatggccaagtgaagctgttggtagca
accgacatcgcggcacgtgggatcgacgtttcgggcgtgtcccatgtcatcaatttcgag
ctgcccaatgtgcccgagcaatatgttcaccgcatcggccgcacggcccgcgccggggcg
gaagggatcgcgatcagcttcgtggcggacgacgagcggccttatctgaaagcgatcgag
cggacggcgaaggtgaagctggagatcgtgcctctgccggagaatttcgtcgaggcggtg
cgtaacatgcccaaggcggccccgccgcgcaaaggccgcgagcagacgccggagcagaag
gccaagcgcgccgatggtcagcgccgctatcaggaccagcagaagcagccgcgcggcaat
gccgagcgggcacaccgccccgatggtgaagccggccagcccgcgaagaagaacttccgt
cgccggcgcggcggcagcggcgtcggcgcgcataagggcgcggtgcagaggacgggcgga
cgttga
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