Sphingobium sp. TKS: K426_14445
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Entry
K426_14445 CDS
T04965
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K426_14445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spht03019
]
K426_14445
03016 Transfer RNA biogenesis [BR:
spht03016
]
K426_14445
Enzymes [BR:
spht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K426_14445
Messenger RNA biogenesis [BR:
spht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K426_14445
Transfer RNA biogenesis [BR:
spht03016
]
Prokaryotic type
tRNA degradation factors
K426_14445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
AMK23821
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All DBs
Position
1:2898919..2901231
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AA seq
770 aa
AA seq
DB search
MASTEKKKKSVPSHSKVRPAGFPTREQVMDFITSADQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRI
VERGKRGALTIGDRILARTEEAGRGWVAHPMKKLAKASEELLGVVEEGDGGKLWLRPVDK
RIRRDTPISDVGTAKKGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHKHGIPH
VFSERVEEEAVTASDLALHEEKREDLRHLPIVAIDPVDARDHDDAVWAAPDEDPDNAGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRADEDRAAM
ACHLVLDASGKVKSWRFSRAIIRVAAVLAYEDAQAAIDGTREEPLLETALKPLWACWALL
RKARDKREPLALDLPERRVVLDEYGKIVSVAVRERLDAHMVIEDYMIAANVAAAKALEAK
KAPVMYRVHEPPSRDKLVALKDYLATFDIEFALGQVVKPATFNRLIERVGEAEEKPQIME
QILRSQTQAYYAPSNLGHFGLALGSYAHFTSPIRRYADLLVHRALVGAYGLELPAPKGGV
IPDRSSLSGEDMENMGRVGEMISQHERRAMEAERETIDRYVAAFLAAHVGDLVEARITGV
QSFGFFATVEGLGGDGLVPVSTLGDERFFYDEAGRALEGVESGDRYTVGQRLQLRLAEAD
PINGALRFELPDALPQRPSFRKDRARPGSARRGRPTNIRHIGAKRGKHRR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaccgaaaagaagaagaaatccgttccctcccacagcaaggtgcggcccgca
ggcttcccgacacgcgaacaggtgatggatttcatcacctccgccgaccaaccggcggga
aagcgggaaatcgcgaaagcgttcggcctcaaggggcaagagaagatcgcgctcaaagcc
ctgctcaaggatatggcggatgagggactgatcgacatcggtccggcgcgcgcctttcac
aagatgggcggcgtgccgaaggtgacggtgctgcggatcgtcgatgtcgacgatacgacc
ctgatcgccacgcccgaacgctgggaggcggagggccaacctgcgccccggctgcgcatc
gtggaacggggcaagagaggcgccctcaccatcggtgaccggatattagcgcggacggag
gaggccgggcgcggctgggtcgcgcatccgatgaagaagctcgccaaggccagcgaggaa
ttgctgggcgtggtcgaggaaggagatggcggcaagctgtggctgcgccccgtcgacaag
cgcattcgccgggacacgccgatttcggatgtggggaccgcgaagaagggcgatctggtg
ttggccgagccggtgggccgcccgccgcgcatcacggcgcgggtaacggatatattgggc
gatcccttcgcgccgcgcagtttcagcctcatcgccattcacaaacatggcattccccac
gtcttttccgagcgggtggaggaggaggcggtcacggcttccgacctggctctgcatgag
gaaaagcgggaggatctgcggcatctgcccatcgtcgccatcgatccggtcgatgcgcgg
gatcatgacgatgcggtctgggctgcgccggatgaagacccggacaatgccggcggttac
aaggcgatcgtcgcgatcgcggacgtcagctattatgtgcggccgggcagcgcgctcgac
cgggaggcgcgcaagcgcgggaacagcgtctatttccctgacctcgtcgtgccgatgctg
ccgcatcagctatcttcggacatgtgttcgctgcgggcggacgaggatcgggcggcgatg
gcctgtcacctcgtcctcgacgcttcgggcaaggtgaagagctggcgtttctcccgcgcg
attatcagggtggctgcggtgctggcctatgaggacgcgcaggcggccatagacgggacg
cgggaggagccgctgctggagacggcattgaagccgctctgggcctgctgggcgctgctg
cgcaaggcgcgggacaagcgggagccgctggcgctggacctgccggagcggcgggtggtg
ctggacgaatatggcaagatcgtcagcgtggcggtgcgcgagcggctcgacgcgcatatg
gtgatcgaggattatatgatcgccgccaatgtcgcggcggccaaggcgcttgaagcaaag
aaggcgccggtcatgtatcgtgtccatgagccgccgagccgggacaagctggtggcgctg
aaggactatctggcgactttcgacatcgaattcgcgctgggacaggtggtgaagcccgcg
accttcaaccgcctcatcgagcgcgtcggggaggccgaggaaaagccgcagatcatggag
cagatcctgcgcagccagacccaggcctattatgcgccgtccaatctgggtcatttcggg
ctggctttgggttcctatgcccatttcacctcaccgatccggcgctatgcggacctgctg
gtgcatcgggcgctggtcggcgcctatggactggaactgcccgcgcccaagggcggcgtc
attcccgaccggtcttcgctgagcggcgaggatatggagaatatgggccgcgtgggcgag
atgatcagccagcatgagcgccgcgccatggaggcggagcgggagacgatcgaccgctat
gtcgcggcctttctggcggcgcatgtgggcgatctggtggaggcgcggatcaccggggtg
cagagcttcggcttcttcgccacggtcgaggggctgggcggcgacgggctggtgccggtc
tcgactctgggcgacgagcgtttcttctatgacgaagccgggcgagcgctggagggggtt
gagagcggagatcgctatacggtcgggcaacgcctgcaattgcggctggcggaggcggac
ccgatcaacggcgcgctgcgcttcgaactgccagatgccctgccccaacggccgagtttc
cggaaggatcgcgcacgtccgggcagcgcccggcgcggacggcccaccaatatccgccat
atcggggcgaagcggggcaagcatcggcggtga
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