Sphingobium sp. TKS: K426_16360
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Entry
K426_16360 CDS
T04965
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K426_16360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spht03019
]
K426_16360
03009 Ribosome biogenesis [BR:
spht03009
]
K426_16360
Enzymes [BR:
spht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K426_16360
Messenger RNA biogenesis [BR:
spht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K426_16360
Ribosome biogenesis [BR:
spht03009
]
Prokaryotic type
rRNA helicases
K426_16360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMK24204
UniProt:
A0A126RQ64
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All DBs
Position
1:3306235..3307980
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AA seq
581 aa
AA seq
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MSFEHLPSLLSDALTRKGYENLTPVQAQVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAGE
LLGEQSRLPVAGKPLALAIAPTRELALQVSRELEWLYGEARARIATCVGGMDAAKERRAL
SHGAHIVVGTPGRLRDHLERGALDLSGLKTVVLDEADEMLDMGFREDLEEILDGAPDERR
TLLFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQALTVAPADIENAVVNLLRY
HEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVAT
DVAARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLR
GAKIPVEWGTPPSKEAIQEQDNARLRASLMEKAELDEQDWALGAELLAEKSAKEIAAMLV
RSARAALPAPEELLDASEAPARRDGPRPGFEDTIWFRMDIGRNQNADPRWILPLICRRGH
VSRGDIGAIRIAANETMFEIPSAIASKFVGAVQRTGQANDEGAEVAIEQIEGKPREMARE
NRREGPHGKGRPNSERGPRPPAHSPRPFKGGPKRAGPRKPR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaacaccttccttcccttctctccgatgcgctgacacggaagggctatgaa
aatctgaccccagtacaggcgcaagtcacccaacccgaagccgaaggccgcgacctgatc
gtgtcggcgcagaccggatcgggcaagaccgtcgctttcggcctggccatggcgggggaa
ctgctgggcgagcagagccgccttcccgtcgcgggcaagccgctggcgctggcgatcgcg
ccgacgcgcgaactggcgttgcaggtcagccgcgagctggaatggctctatggcgaggcc
cgcgcccgcattgccacttgtgtaggcggcatggatgctgccaaggaacgccgggcgctc
agccatggcgcgcatatcgtcgtcggcacgccgggccgtctgcgcgaccatctggagcgt
ggcgcgctcgacctttcaggcctcaagaccgtggtgctcgatgaagccgacgaaatgctc
gacatgggctttcgcgaggatctggaagagattctcgacggcgcaccggacgaacggcgc
acgctgctcttctccgccaccatgcccaagccgatcgtggcgctggccaagcgctatcag
aaggatgcgctgcgcatttccaccgtcagcgacgagcgcggccatggcgacatcagctat
caggcgctgacggttgcccccgccgacatcgagaacgccgtggtcaacctgctgcgctat
catgaggcggagacggcgatcctcttctgcgccacccgcgataatgtgcgacacctccac
gccagcctgaccgagcgcggctttgccgccgtggcgctgtcgggcgagcatagccagaat
gagcgcaaccacgccctgcaagccctgcgcgaccgccgggcacgggtgtgcgtggcgacc
gacgtggcggcgcgtggcatcgacctccccaatctcagcctcgtcgtgcatgtcgaactg
ccgcgtgatgcggagacgatgcaacaccgttcgggccgcaccgggcgcgcggggaagaag
gggacggccgtgctgatcgtgccctatccgcgccgccgccgggtcgaatccatgctgcgt
ggcgcaaagattccggttgaatggggcaccccgccgagcaaggaagcgatccaggagcag
gacaatgcgcggctgcgcgccagcctgatggagaaggccgagctggacgagcaggactgg
gcgctgggcgccgagctgctggccgaaaagtccgccaaggaaatcgcggcgatgctggtg
cgcagtgcccgtgccgccctgcccgcccccgaggagctgctggatgccagcgaagcgcct
gcgcggcgggacggaccgcgtccgggctttgaggacaccatctggttccgcatggacatc
ggccgcaaccagaatgccgatccgcgctggatattgccgctgatctgccgtcgcgggcat
gtcagccggggcgatatcggcgcgatccgcattgccgccaatgaaacgatgttcgaaatt
ccctccgccatcgcttcgaagttcgtcggcgcggtgcagcgcaccggccaggccaatgac
gaaggcgccgaagttgccatcgagcaaatcgagggcaagccacgcgaaatggcgcgggag
aatcggcgcgaaggaccgcatggcaagggacggcccaatagcgagcgcggcccgcgccca
cccgcacacagcccgcggcccttcaagggcggccccaagcgcgctgggcctcgcaagccc
cgctaa
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