Sphingobium sp. TKS: K426_17615
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Entry
K426_17615 CDS
T04965
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K426_17615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spht03021
]
K426_17615
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_17615
Enzymes [BR:
spht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K426_17615
Transcription machinery [BR:
spht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K426_17615
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K426_17615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMK24455
UniProt:
A0A126RS79
LinkDB
All DBs
Position
1:3571011..3575267
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPVQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLSDMQEVHQALYA
KAVTLHSKITSRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKEGTVAETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDVVANAMMDEIRAQPKDPATGRMAQINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGTVIVPIGTLLDEALVAQIEAIGTQAVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
IMDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATVLIADGDPVAKGERFAEWDPFTM
PVITEKPGIVKYVDLIDGKTLAEQTDEATGIAQRVVTEHRGAARTKEDLRPRLTLLDDGS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQIDREEMDEINSKLQPGFAPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAQEHAAELAQGPEAAIGDDPLAAVQGEDFTTEDME
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgccaatccggtccagaagccggaaaccttcgaccagatc
cagatcggcctcgcctccccggaacgcatccgcagctggtccttcggtgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcttgttctgcgcgcgc
atcttcggtccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggcgtggaagtgaccgtgtcgaaggtccgccgcgag
cgcatgggccatatcgaactggccgccccggtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagttgaagcagcttgagcgggtgctgtat
ttcgaatcatacatcgtcaccgagccgggcctgaccccgctcgaaaagttccagcttctg
accgaagacgaactgctggacgcgcaggacgaatatggcgaggacgccttctccgccggg
atcggcgcggaagcggtcaagcagatgctgatggacctcgaccttgagggcgagaagcag
gcgctgctggacgaactggccgtcaccaagtcggaactcaagcccaagaagatcatcaag
cggctgaaggtcgtcgagagcttcctggaatcgggcaaccgtcccgaatggatgatcctg
gacgtcgttccagtcatcccgccggaactgcgcccgctggtgccgctggacggtggccgc
ttcgcgacgtcggaccttaacgacctctatcgccgcgtgatcaaccgcaacaaccgcctg
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgtcgacgccctgttcgacaatggccgccgcggccgcgtcatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctctccatgaccctgaagcaggcgaagaaa
tgggtcgaaaaggagcgcaaggaggtctgggacatcctggacgaagtgatccgcgagcac
ccggtcatgctgaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgaaccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagttggaa
gcccgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtcccctcgcaggacatggttctgggtatctattacctgtccatggaacgtgaaggc
gagccgggcgaaggcatgctgctgtccgacatgcaggaggtccatcaggctctctatgcc
aaggccgtgacgctgcactcgaagatcaccagccgcgtgccgcagaccgacgaagccggc
aatcagtatatgaagcgcttcgaaacgacgccgggccgcatgctgctgggcgaatgtctg
cccaagagccacaaggtgcccttcgacgtcgtcaaccgccttctcaccaagaaggaaatc
ggggacgtcatcgatcaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggccggcatttcgttcggcaag
gacgacatggtgatcccggactcgaaggaaggcaccgtcgccgaaaccaaggcgctggtg
gctgattacgagcagcaatatcaggacggcctgatcactcagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgacgtggtggcgaacgccatgatggacgagatt
cgcgcccagcccaaggatccggcgaccggccgcatggcccagatcaactcgatctacatg
atggcgcactccggtgcccgtggttcgcaggcccagatgaagcagcttgccggtatgcgc
ggcctgatggccaagccgtcgggcgaaatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatatttcaactccacccatggtgctcgaaaagggcttgcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggattgcaccatcgtcgaggaagattgcggcaccgaaaaggcgctggagatgaaagcc
atcgtccagggcggttcggtcatcgcctcgcttggcgagcgcatcctgggccgcaccacg
gcgcaggatatcgtcgacagcaaggacggcaccgtcatcgtgccgatcggcacgctgctc
gacgaagcgctggtggcgcaaatcgaggccatcggcacgcaggccgtgaagatccgcagc
ccgctgatctgcgaaagcaagatgggcgtctgcggcaagtgctacggccgtgacctcgcc
cgtggtacgccggtcaatatcggtgaagcggtcggcgtcatcgcggcgcagtccatcggt
gaaccgggcacgcagctgaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccatgtcggacggcacgatcgagctgcgcgacatgccgacc
atcatggacaagaatggccgtcgcctgtcgctcgcccgtaacggcgagatcgcgatcatc
gatagcgaaggtcgcgaacgcgaaacccaccgcctgccttacggcgccaccgtcctcatt
gccgacggtgaccccgtggcgaagggcgaacgctttgccgagtgggatccgttcaccatg
ccggtgatcaccgaaaagccgggtatcgtgaaatatgtcgacctgatcgacggcaagacg
ctggccgaacagaccgacgaagccaccggcatcgcgcaacgcgtggtgacggagcatcgc
ggtgccgcccgtaccaaggaggatctgcgcccgcgcctgaccctgctggacgacggctcg
ggcgaagccgcccgctacatgctggcggtcggcgcgaccctgtcggtcgatgacggtgcg
caggtgcaggccggtgacgtgctggcgcgtgtcagccgcgaagcggccaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gcgatcattgccaaggtgtcgggccgcgttcagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatcccgaggatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgacttcgtgaagcgcggcgacaacctgatcggcggt
tcgcccgacccgcacgacattctggaagtgctcggcatcgagccgctggccgaatatctg
gtcgcggaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gagacgatcgttcgccagatgctgcaaaaggtcgagatcatcgagtccggcgacaccact
ttgctggtgggcgagcagatcgaccgcgaggaaatggacgagatcaacagcaagctccag
ccgggcttcgcgcccgccgcgggcaagccggtgctgctcggcatcaccaaggcctcgctc
cagacgcgttccttcatctcggcggcgtccttccaggaaaccacccgcgtcctcaccgaa
gcggcggttcagggcaagaaggacacgctggtgggcctcaaggaaaacgtcatcgtcggc
cgcctcatcccggcgggtaccggcgccggcatgaaccgcatgcgcgtcgccgcctcgtcg
cgtgatgcggcgatgcgggccgcgctgcgggcgtcgagccaggtcgacctgatcgcgccc
aagacggccgcgcaagagcatgccgccgaactggcccagggtccggaagccgccatcgga
gacgatccgctggctgctgttcagggtgaggatttcaccaccgaggacatggaataa
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integrated database retrieval system
