Sphingobium sp. TKS: K426_17765
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Entry
K426_17765 CDS
T04965
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K426_17765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_17765
Enzymes [BR:
spht01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K426_17765
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K426_17765
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K426_17765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
PSMbeta
Motif
Other DBs
NCBI-ProteinID:
AMK24483
UniProt:
A0A126RQG4
LinkDB
All DBs
Position
1:complement(3606110..3606922)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTVAGLRSVLEGAVLTRVEPRRADLRFPIPVDLRQRLTGATITALSRRAKYG
LIDTDRGDTLIFHLGMSGRWRIDPAEIGAHDHLLIETSGGRLLSLNDPRRFGSLDLVRSE
VWESYSPFTRMGPEPLGPDFTAAALTARLHGKATSIKAALLDQRIVAGLGNIYVCEALNM
AGIAPTREAGKISRPRLTLLVEAIREVLTAAIAAGGSTLRDYARPDGELGYFSKQWRVYG
REGQPCHCGTPISRRVDGGRSTFFCPKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccctgaagtcgaaaccacggtcgcgggcctccgctcggttcttgagggc
gccgtcctcacccgtgtcgagccgcgccgcgccgacctgcgcttcccgattcccgtcgac
ctgcgccagcggctgaccggcgccacgatcacggcactgtcccgccgcgccaaatatggc
ctgatcgacaccgaccggggcgacacgctgatcttccatctcggcatgtccggccgctgg
cgaatcgatccggcggagatcggtgcgcacgaccatctgctgatcgagacctcgggcggg
cgattgctctccctcaacgacccacgccgcttcggctcgctcgatctcgtccgcagcgag
gtttgggaaagctacagcccgttcacccgcatggggccggaaccattgggtccggacttc
accgccgctgccctgacggccaggctccatggcaaggcgacctcgatcaaggccgcgctg
ctcgatcagcgcatcgtcgcgggcctgggcaatatctatgtctgcgaagcgctcaacatg
gcgggcatcgccccgacccgcgaagcgggcaagatcagccgcccgcgccttactttgctg
gtcgaggcgattcgcgaggtgctgaccgccgccattgccgctggcggctccaccttgcgc
gactatgcgcggcccgatggggagctgggctatttctcgaaacaatggcgggtctatggc
cgcgaagggcagccatgccactgcggcacgcccataagccgccgggtggatggaggcaga
tcgacctttttctgcccgaaatgccagcgatag
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