Sphingobium sp. TKS: K426_20430
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Entry
K426_20430 CDS
T04965
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K426_20430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spht03019
]
K426_20430
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_20430
Enzymes [BR:
spht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K426_20430
Messenger RNA biogenesis [BR:
spht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K426_20430
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K426_20430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMK25015
UniProt:
A0A126RTW4
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All DBs
Position
1:complement(4120147..4121919)
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AA seq
590 aa
AA seq
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MRPDIPTLLHDVFGFPGFRGVQEQVVSRIMAGQPTLAIMPTGAGKSLCYQLPAVALDGCC
VVVSPLIALMHDQLRAAQAVGIRAASLTSVDADWRETQDRLRNGDLDLLYVAPERASGEG
FRNLLRSAKIALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADHHTRD
DILVQLGIPRDGLIIAGFDRPNIRYAVHPRDGLPRQLSDLIASRTGPGIVYAPTRAATEK
LAETLAKTGRPTRAYHAGLEPQLRAANQAAFIASEDMVMIATIAFGMGIDKPDVRFVAHA
ALPKSIEGYYQESGRAGRDGEPAEAHLFWGADDFARARQRIGELHPLRQQGERVRITALG
GLVETGTCRRAILLRHFGENPPPGCGNCDNCLNPPPSIDATQTARKFLSAVYRTGQSFGV
GHIEQVLTGAVSDKIRERGHDKISVYGIVDGEETALLRPVSRALLVRDALQTNEHGGLEF
GPNARPILRGEEEVSLVLPPRKERRRKNARNGSAENPVGDPLFDALRACRRELAQEAGVP
PYVVFHDSTLREMAEQRPTTLTELGHISGVGQRKLDAYGDAFLAAIRSYL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccgacatcccgaccctcctccacgacgttttcggttttcccggcttcaggggc
gtgcaggaacaggtggtcagccgcatcatggcgggccagccgacgctcgcgatcatgccg
accggcgcgggcaagtcgctctgctaccagcttcctgccgtcgcgctcgacggctgctgc
gtcgtcgtgtcccccttgatcgcgctgatgcacgaccagcttcgcgccgcgcaggcagtc
ggcatccgcgccgccagcctcaccagcgtcgacgccgactggcgcgagacgcaggaccgg
ctgcgcaatggcgatctcgacctgctctatgtcgcgcccgaacgcgccagcggggagggg
tttcgcaacctcctgcgcagcgccaaaatcgctctcttcgccatagacgaggcccattgc
gtctccgaatggggccatgatttccgcccagactatcgcctgctgcgtccgttgctggat
gaatttccggatgtcccgcgccttgcgctcaccgccaccgccgaccatcacacccgcgac
gatatcctggtccaattgggaatcccccgcgacggcctgatcatcgcgggcttcgaccgt
ccgaacatccgctacgccgtccacccccgcgacggtttgccacgccagctctccgacctg
atcgccagccggaccggccccggcatcgtctatgcgcccacccgtgccgcgaccgagaaa
ctggccgagactctcgccaagacgggccgcccgacccgcgcctatcatgccgggctggag
ccccagctccgcgccgccaatcaggccgccttcatcgccagcgaggatatggtgatgatc
gcgaccatcgccttcggcatgggtatcgacaagcccgacgtccgcttcgtcgcccatgcg
gcgctgcccaagtcgatcgaaggctattatcaggaatccggccgcgcaggccgcgacggc
gaacccgccgaagcgcatcttttctggggcgccgacgatttcgcgcgcgcccggcaaagg
attggggaactccaccctctccgccagcagggcgagcgcgtccgcatcacggcgctgggc
gggctggtcgaaaccggcacctgccgccgcgccatattgctccgccattttggcgagaat
cctccgccgggctgcggcaattgcgacaattgcctcaatccgccgcccagcatcgacgcg
acccagaccgcccgcaaattcctgtccgccgtctatcgcaccggccagagcttcggtgtc
ggccatatcgagcaggtgctgaccggtgccgtcagcgacaagattcgcgagcgcggccat
gacaagatctcggtctatggcatcgtcgacggcgaggagacggcgctgctccgtcccgtc
tcccgcgcgctgttggttcgcgatgcgctccagacgaacgaacatggcggcctggaattc
ggtcccaatgcccgcccgatcctgcgcggcgaggaagaggtcagcctcgtccttccgccc
cgcaaggaacgccgccgcaagaacgcccgcaacggcagtgccgagaaccccgtgggcgac
ccgctgttcgacgccctgcgcgcctgccgtcgcgaactggcgcaggaagcgggcgtgccg
ccctatgtcgtcttccacgattcgaccctgcgcgaaatggcggagcagcggcccaccacg
ctcaccgaactgggccacatcagcggcgtgggccagcgcaagctggacgcctatggcgac
gcttttctcgccgcgatccggtcttatctttga
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