Uncultured Sphingopyxis sp. UC10: SPPYR_0243
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Entry
SPPYR_0243 CDS
T05531
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphu03016
]
SPPYR_0243 (truB)
Enzymes [BR:
sphu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SPPYR_0243 (truB)
Transfer RNA biogenesis [BR:
sphu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SPPYR_0243 (truB)
Prokaryotic type
SPPYR_0243 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
SBV31363
UniProt:
A0A1Y5PMV5
LinkDB
All DBs
Position
SPPYR:257769..258743
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AA seq
324 aa
AA seq
DB search
MNGWIIFDKPVGLGSTQAVGAVKRVCREAGLGKVKVGHGGTLDPLASGVLPIALGEATKL
CGRMLDASKVYDFTIAFGTETAGLDAEGEIVASSDVRPTLAEIEAVLPRFTGPIEQVPPA
YSAIKIDGERAYDRARKGEAVEMKARGVVIYSLSIRHPGEGRDLAIGGSDPDRRDPGLRR
GDGLGSGEGLQEITLTAHVSKGTYIRSLARDIACAVGTVGHVTMLRRTRAGPFTLEQAIS
LDKLNAFGQGAAQSEIILPLEAGLVDIPALNLSPEAAGAIRQGRVWAGGSTEDGLYWGRD
SDMRPVALIEALAGTLKVVRGFNL
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctggatcatattcgacaaacccgtgggtctcggctcgacgcaggcggtcggc
gcggtgaagcgcgtgtgccgcgaggccgggctgggcaaggtcaaggtcggccatggcggg
acgctcgatccgctcgcgtcgggcgtgctgccgatcgcgctcggcgaggcgacgaagctc
tgcgggcggatgctcgatgcgagcaaggtctatgacttcaccatcgcgttcgggaccgaa
accgccgggctcgatgccgaaggcgagattgtcgcttcgagcgacgtgcgaccgacgctc
gcggaaatcgaagcagtgctgccccgctttaccggaccgatcgagcaggtgccgccggcc
tattcggcgatcaagatcgatggtgagcgagcatatgaccgcgcgcgcaagggcgaagcg
gtcgagatgaaggcgcggggggtcgtcatatattccctttccatccgtcatcccggcgaa
ggccgggatctcgccattggcggctcagacccggaccggcgagaccccggccttcgccgg
ggtgacgggttggggtcaggggaggggcttcaggaaatcaccctcaccgcccacgtctcc
aaaggcacctatatccgcagcctcgcccgcgacatcgcgtgtgcggtcggcaccgtcggg
catgtcaccatgctccgccgcacgcgcgcgggccccttcacgctcgaacaggcgatttcg
ctggacaaattgaacgctttcggccaaggggccgcgcaatcagaaataattctgccgctc
gaggcagggctggtcgacatcccggctctgaacctttccccggaagcggcaggggcgatc
cgtcagggtcgcgtctgggccgggggtagcacggaagacgggctctattggggaagggac
agcgatatgcgtcccgtcgccctgatcgaggctttggcgggaacgctgaaagtcgtccgg
ggcttcaatctgtaa
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