Uncultured Sphingopyxis sp. UC10: SPPYR_0246
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Entry
SPPYR_0246 CDS
T05531
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPPYR_0246 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphu03019
]
SPPYR_0246 (pnp)
03016 Transfer RNA biogenesis [BR:
sphu03016
]
SPPYR_0246 (pnp)
Enzymes [BR:
sphu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SPPYR_0246 (pnp)
Messenger RNA biogenesis [BR:
sphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPPYR_0246 (pnp)
Transfer RNA biogenesis [BR:
sphu03016
]
Prokaryotic type
tRNA degradation factors
SPPYR_0246 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
BioW
Motif
Other DBs
NCBI-ProteinID:
SBV31366
UniProt:
A0A1Y5PRL5
LinkDB
All DBs
Position
SPPYR:259299..261614
Genome browser
AA seq
771 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLDLVVA
ATHDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIIKLAEQAAKEPWEMAASDDNA
AIKDKIKKLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFTEDGLDPQAVMAGIKLTKK
LEAEIVRTAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
DAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALTQAKEGRAHILGEMNK
ALGEVRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLDQIEAARKWIAGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVADVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPRGDRGERGDR
GDRGPRRDGGDRGRGGRDRGPRRDGGDRGPRRERSEDGPEDQGHVPDFLKD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgacgctcgaaacg
ggcaaggttgcccgccaggccgacggcgccgtgatggcgacgctgggcgaaacggttgtc
ctgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggacttcttcccgctcacc
gtccattatcaggaaaaatattcggccgccggccgcatcccgggcggcttcttcaagcgc
gagcgcggcgcgaccgaaaaggaaacgctggttagccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggcttctacaacgagatcaacgccatcgcccaggtgctgagctat
gacggccacaacgagcccgacatccttgcgatggtcgcggcgtcggccgcgctcaccatt
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggttatctgaacggcgaa
tatatcctgaacccgaccgacgaacaggtggccgagggcgacctcgacctcgtcgtcgcg
gcgacgcacgacgcggtgatgatggtcgaatccgaagccaacgagctgtcggaagaggtg
atgctcggcgccgtgttgttcgcgcacgatgcctgcaaggaagtcgtgaaggcgatcatc
aagctcgccgaacaggccgccaaggaaccttgggaaatggccgcgtcggacgacaatgcc
gcgatcaaggacaagatcaagaagctgatcggcaaggacattgcggccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctcaacgaagcgcgcgcgaaggcgaaggcgcag
tttaccgaagacggtctcgacccgcaggcggtgatggcgggcattaagctcaccaagaag
ctcgaagccgaaatcgtccgcaccgcgatcctcaaggacggcaagcgcatcgacggccgc
acaacgacgcagatccgtccgatcgtcgccgaaacgcacttcctgccgcgcgcgcacggc
tcggcgctgttcacccgcggcgagacccagacgattgcgaccgcgacgctgggcaccaag
gatgccgagcagatgatcgacggccttaacggcctgtcgtaccagcacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgccgc
gaagtcggtcacggcaagctcgcgtggcgcgcgctgcaccccgtgctgccgacgaaggac
gagttcccctatacgatccgcctcaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtgtgtggtggttcgctcgcgatgatggacgccggcgtgccgatcaagcgc
cccgtctcgggcatcgcgatgggcctgatcctcgaaggcaaggattatgcgatcctcagc
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtcgcgggaacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgaaggaaatcttc
gaagccgcgctgacccaggccaaggaaggccgcgcgcacatcctcggcgagatgaacaag
gcgctcggcgaagtccgcagcgaattgtcggcgcacgcgccgcgcatcgagacgatgcag
atcgacaagtcgaagatccgcgatgtcatcggcaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggtctgatcaagatctcgtcg
agcgacctcgatcagatcgaagcggcgcgcaagtggatcgccggcatcgtcgaggaagct
gaagtcggcaagatttatgacggcaaggtcgtcaacctcgtcgatttcggggcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcaagaacgagcgcgtc
gagaaggtggccgacgtcctcagcgaaggccaggaagtcaaggtcaaggtgctcgagatc
gacccgcgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaggaa
ctcgaagacacgcgtccggcgcgcgaacccagaggcgatcggggcgagcgcggtgaccgt
ggcgatcgcggcccgcgtcgcgacggtggcgaccgtggccgcggcggccgcgaccgtggc
ccgcgccgcgatggcggcgaccgcggcccgcgtcgcgagcgcagcgaagacggtccggaa
gatcagggccatgtgcccgacttcctgaaggactga
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