Uncultured Sphingopyxis sp. UC10: SPPYR_0840
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Entry
SPPYR_0840 CDS
T05531
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPPYR_0840 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphu03019
]
SPPYR_0840 (rhlE)
Enzymes [BR:
sphu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPPYR_0840 (rhlE)
Messenger RNA biogenesis [BR:
sphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPPYR_0840 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Helicase_C_2
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SBV31960
UniProt:
A0A1Y5PPR5
LinkDB
All DBs
Position
SPPYR:908099..909505
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AA seq
468 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKNYTQPTPIQLQAIPVLKQGRDLCGIAQTGTGKTAAFSLPS
IHHLLTYPHGANPRSCRMLVLSPTRELAAQIAQSCRDYGRFTKLSISTVFGGVPINRQIR
DLAKGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRIAKLLPSR
RQNLFFSATMPREIAGLADQFLNDPVTVSVTPQATTAEKIRQYSTFVEQKEKQALLTAVI
NREDIDRALIFTRTKHGADRVVRHLAGAKIKAMAIHGNKSQAARTRALSGFKDGNVAVLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGKAISFIAPDERTYMRDI
ERVTRTKSEPMPLPDNFSELVRNLPKPVQPPRDTGSKGRNPQRQREEAHRQRDGGQRDAG
HRDGGQPRGDRGPRRDAPAADGQPQRKRRFRPRNKSVGAHKGAVKRVG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgacgactttcaacgactttggcctgcacgccgacatcaatcgcgcgcttgccgccaaa
aactatacccagccgacgccgatccagcttcaggcgatccccgtgctcaagcagggccgc
gacctctgcggtatcgcgcagaccggcaccggcaagaccgcggccttttcgctgccgtcg
atccaccacctgctgacctatccgcatggcgcgaatccgcgcagctgccggatgctcgtc
ctctcgccgacgcgcgagcttgcggcgcagatcgcgcagagctgccgcgactatggccgc
ttcaccaagctcagcatctcgaccgtctttggcggcgtgccgatcaaccggcagatccgc
gaccttgcaaagggcgtcgacatcctcgtcgcgacgccgggccggctgctcgacctgatc
gaccagcgcgcgctgcgtctcgacgacgtcgaaatcttcgtcctcgacgaagccgaccag
atgatggacatgggtttcatccactcgctgcgccgcatcgccaagctgctcccgtcgcgc
cgccagaacctcttcttctcggcgacgatgccgcgggagatcgcggggctcgccgaccag
ttcctcaacgatccggtcaccgtgtcggtcacgccgcaggcgacgaccgcggaaaagatc
cgccaatattcgaccttcgtcgagcagaaggaaaagcaggcgctgctgaccgcggtgatc
aatcgcgaggacatcgaccgcgcgctcattttcacccgcaccaagcatggcgccgaccgc
gtcgtgcgccatctggcgggtgcgaagatcaaggcgatggcgatccacggcaacaagagc
caggcggcgcgcacccgcgccctgtcgggcttcaaggacggcaacgtggccgtgctggtg
gccaccgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtgatcaacttc
gaaattccgaatgtccccgaacaatatgtccaccgcatcggccgcaccgcgcgcgccggc
gccgagggcaaggcgatcagcttcatcgcccccgacgagcgcacttacatgcgcgacatc
gagcgggtgacgcggactaaatcggagccgatgccgctgcccgacaatttcagcgaactg
gtgcgcaacctgcccaaaccggtgcagccgccgcgcgacaccggcagcaagggccgcaac
ccgcagcgccagcgcgaggaagcgcaccgtcagcgggacgggggccaacgcgacgccggg
caccgcgacgggggccagccgcgcggcgaccgcggcccgcgccgcgatgctccggcggct
gacggccagccgcagcgcaagcgccgcttccgcccgcgcaacaagagcgtcggcgcgcac
aagggcgcggtcaagcgcgtcggttga
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