Uncultured Sphingopyxis sp. UC10: SPPYR_1877
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Entry
SPPYR_1877 CDS
T05531
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SPPYR_1877 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphu03019
]
SPPYR_1877 (rnc)
03009 Ribosome biogenesis [BR:
sphu03009
]
SPPYR_1877 (rnc)
03036 Chromosome and associated proteins [BR:
sphu03036
]
SPPYR_1877 (rnc)
Enzymes [BR:
sphu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
SPPYR_1877 (rnc)
Messenger RNA biogenesis [BR:
sphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPPYR_1877 (rnc)
Ribosome biogenesis [BR:
sphu03009
]
Eukaryotic type
90S particles
RNase
SPPYR_1877 (rnc)
Prokaryotic type
rRNA processing factors
SPPYR_1877 (rnc)
Chromosome and associated proteins [BR:
sphu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
SPPYR_1877 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
DSRM_2
Glyoxalase_6
Motif
Other DBs
NCBI-ProteinID:
SBV32997
UniProt:
A0A1Y5PZQ4
LinkDB
All DBs
Position
SPPYR:complement(2003647..2004327)
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AA seq
226 aa
AA seq
DB search
MSDILDTGALADIIGCTPDDIALYDLALTHGSTGRADYQRLEFLGDRVLGLVIASELYTR
FPAASEGEMSSRLHVLASGATCATIAQKLDLTALIRFGAQARNDGGRYSDNIAADAIEAL
IGALYLDKGAEAARRFILTYWNEMIDGQQAAPKHPKAALQEWALARKRRPPEYEIVSREG
PDHAPRFRVAVRVGKLARAEAEGASKQAAEKAAAAALLAELEGMKK
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgatattctcgacaccggggctctcgccgacattatcggctgcactccggatgat
atcgcgctctacgacctcgcgctgacgcatggcagcaccgggcgcgccgattatcagcgg
ctcgagttcctcggcgatcgcgttctcggcctcgtcatcgcgtccgaactctacacgcgc
tttcccgcggcgagcgagggcgagatgtcgtcgcggctgcatgtgctcgcctcgggcgcg
acctgcgccacgatcgcgcaaaagctcgacctcaccgcgctgatccgtttcggcgcgcag
gcgcgcaacgacggcggccgctacagcgacaatatcgccgccgacgcgatcgaggcgctg
atcggcgcgctctatctcgacaagggtgcggaagcggctcggcgattcattctgacctac
tggaacgagatgatcgacgggcagcaggcggcgcccaagcatcccaaggcggcgctccag
gaatgggcgcttgcgcgcaagcgccgcccgcccgaatatgagatcgtgtcgcgcgagggc
cccgaccatgcgccgcgcttccgcgtcgcggtgcgcgttggcaagctcgcgcgcgccgaa
gccgagggcgccagcaaacaggcggcggagaaggccgcggcggcagctctgcttgccgaa
ctcgaaggaatgaaaaaatga
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integrated database retrieval system