Uncultured Sphingopyxis sp. UC10: SPPYR_3036
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Entry
SPPYR_3036 CDS
T05531
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPPYR_3036 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphu03021
]
SPPYR_3036 (rpoD)
Transcription machinery [BR:
sphu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPPYR_3036 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF6565
Motif
Other DBs
NCBI-ProteinID:
SBV34156
UniProt:
A0A1Y5PZP3
LinkDB
All DBs
Position
SPPYR:3186776..3188791
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AA seq
671 aa
AA seq
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MATKNTEADTDAPLIDLNEADVKKLIARGKKRGYLTYDELNEALPQDQMSSEQIEDIMSA
ISDMGINIVESDEDVQEEAEQESDDDIDVSAGTGSVSNPAIEKKKETVDRTDDPVRMYLR
EMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPLTFNAIIEWSNALNNGDMQLREIVD
LEAMLSKDPAPENLDEEGAEDDGEISEKTAGVSFKDEDEVEEEPSADGDDEDGEGSSGKR
ESFEEDEEDNTLSLAAMEELLKPDALEKFAAITKSFKAFSKLQDARLEALSGGEEFPSAS
EKKYHKLREELTAQVESVQFHGTKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRKSF
LDNYVGRELEENWLDSVSGIDKKWAAFAENEAGAVDRIRIEISEIAQAAGMSLTEFRRVV
NMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRCSRQFLHESGREPTPEE
MAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQSNLKE
TVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS
RSRKMRSFLDQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaagaacaccgaagccgatactgacgccccgctgatcgacctcaacgaggcc
gacgtcaaaaagctgatcgcgcgcggcaagaagcgcggttacctgacctatgacgaattg
aacgaggcgctgccgcaggaccagatgtcgtcggagcagatcgaggacatcatgtcggcg
atctccgacatgggcatcaacatcgtcgagagcgacgaggatgtgcaggaagaggccgag
caggaaagcgacgacgatatcgacgtcagcgccggcacgggttcggtctccaaccccgcg
atcgagaagaagaaggaaacggtcgatcgcaccgacgatcccgttcgcatgtatctgcgc
gaaatgggcgcggtcgaattgctcagccgcgaaggcgagatcgcgatcgcgaagcgcatc
gaggcgggccgcgacacgatgatcctcgggctgtgcgaaagcccgctgaccttcaacgcg
attatcgaatggtcgaatgcgctcaacaacggcgacatgcagctgcgcgagatcgtcgat
ctcgaagcgatgctgtcgaaggatcccgcgcccgaaaatctcgacgaggaaggcgccgag
gacgacggtgagatcagcgagaagaccgccggcgtctcgttcaaggacgaggatgaggtc
gaggaggaaccctcggccgacggcgacgacgaggacggcgaaggctcgtcgggcaagcgc
gaaagcttcgaggaggatgaggaggacaacacgctcagcctcgccgcgatggaagagctg
ctgaaacccgacgcgctcgagaagttcgccgcgatcaccaagagcttcaaggccttctcg
aagctgcaggacgcgcgcctcgaagctttgtcgggcggcgaggaatttccgtcggcgtca
gagaagaaatatcacaagctgcgcgaggagctgaccgcgcaggtcgaaagcgtgcagttc
cacggcaccaagatcgaatatctcgtcgaccagctctacagctacaaccgccgcctgacc
gcattgggcggccagatgctgcgcctcgccgagcgccacaaggtgccgcgcaagtcgttc
ctcgacaattatgtcgggcgcgagctcgaggaaaactggctcgacagcgtcagcggcatc
gacaagaaatgggccgccttcgccgagaatgaagccggcgcggtcgatcgcatccgcatc
gagatcagcgaaatcgcgcaggcggcgggcatgagcctgaccgaattccgccgcgtcgtg
aacatggtccagaagggcgagcgcgaggcgcgcatcgccaagaaggaaatggtcgaggcg
aacctgcgcctcgtgatctcgatcgcgaagaaatataccaaccgcgggctgcagttcctc
gacctcattcaggagggcaatatcggcctgatgaaggcggtcgacaaattcgaatatcgc
cgcggctacaagttctcgacctatgcgacctggtggatccggcaggcgatcacccgctcg
atcgccgaccaggcgcgcacgatccgcatcccggtccacatgatcgagacgatcaacaag
ctggtgcgctgcagccgccagttcctccacgagagcggccgcgagccgacgccggaggaa
atggccgagcggctgtcgatgccgctcgaaaaggtccgcaaggtgatgaagatcgccaag
gagccgatcagcctcgaaacgccgatcggcgacgaggaagacagccacctcggcgatttc
atcgaggacaagaacgcggtgatcccggtcgacgccgcggtgcagtcgaacctcaaggaa
acggtgacgcgcgttttggcgtcgctcaccccgcgcgaggagcgcgtgctgcgcatgcgc
ttcggtatcggcatgaacaccgaccatacgctcgaggaagtcggccagcagttcagcgtg
acgcgcgaacgcatccgtcagatcgaagcgaaggcgctccgcaagctgaagcacccgtcg
cgcagccgcaagatgcgcagcttcctcgaccaataa
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