Uncultured Sphingopyxis sp. UC10: SPPYR_3634
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Entry
SPPYR_3634 CDS
T05531
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPPYR_3634 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphu03021
]
SPPYR_3634 (rho)
03019 Messenger RNA biogenesis [BR:
sphu03019
]
SPPYR_3634 (rho)
Transcription machinery [BR:
sphu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SPPYR_3634 (rho)
Messenger RNA biogenesis [BR:
sphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPPYR_3634 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
ATPase_2
Spore_III_AA
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_25
AAA
AAA_14
GpA_ATPase
AAA_28
Motif
Other DBs
NCBI-ProteinID:
SBV34749
LinkDB
All DBs
Position
SPPYR:complement(3813557..3814813)
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AA seq
418 aa
AA seq
DB search
MHLKELKTKAPAQLVEMAEELGVEGASTLRKQDLMFSILKELAEEGEEIIGSGTIEVLPD
SFGFLRSSDANYLAGPDDIYVSPNQVRKYGLRTGDTVEGEIRAPRDGERYFALTKLIKVN
FDDPEAVRHRVNFDNLTPLYPNQKLSLDTVDPTVKDKSARVIDLVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVYLIVLLVDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPSLDV
GKSGTRKEELLVEKDKLSKMWVLRRILMQMGTVDAMEFLLDKIKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaaagaactcaagaccaaggcgcccgcccagctcgtcgaaatggccgaggaa
ctgggcgtcgagggcgcctcgacgctgcgcaagcaggacctgatgttctcgatcctgaag
gaactcgccgaagagggcgaggaaatcatcgggtcgggcacgatcgaggttctccccgat
tccttcggttttctgcgctcgtcggacgccaactatcttgccggccccgacgacatctat
gtctcgccgaaccaggtccgcaaatatggcctgcgcaccggtgacacggtcgagggcgaa
atccgcgcgccgcgcgacggcgaacgctatttcgcgttgaccaagctgatcaaggtcaat
ttcgacgatcccgaagcggtgcgtcaccgcgtcaatttcgacaatctcaccccgctctac
ccgaaccagaagctgtcgctcgataccgtcgacccgaccgtcaaggacaagtcggcgcgc
gtcatcgacctcgtcagcccgcagggcaagggccagcgcgcgctgatcgtcgcgccgccg
cgcaccggcaagacggtgctgctgcagaatatcgccaaggcgatcaccgacaatcatccc
gaggtttacctcatcgtccttctcgtcgacgaacgtcccgaggaagtcaccgacatgcag
cgcagcgtgaagggcgaggtcgtctcctcgaccttcgacgagcccgcgacgcgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtcgagcacaagaaggatgtc
gtcatcctgctcgactcgatcacgcgtctcggccgcgcctacaacaccgtcgtcccctcg
tcgggcaaggtgctgaccggcggcgtcgatgccaatgcgctccagcgtccgaagcgtttc
ttcggcgccgcgcgcaacatcgaggagggcggctcgctgtcgatcatcgccacagcactg
atcgataccggcagccgcatggacgaagtgattttcgaggaattcaagggcacgggcaac
tcggagatcgtgcttgatcgcaaggtcgccgacaagcgcatcttcccgagtcttgacgtc
ggcaagtcgggcacccgcaaggaagaattgctcgtcgagaaggacaagctttcgaagatg
tgggtgctgcgccgcatcctcatgcagatgggaaccgtcgatgcgatggaattcctgctc
gacaagatcaaggattcgaagaccaacgaggatttcttcgatagcatgaaccaataa
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