Uncultured Sphingopyxis sp. UC10: SPPYR_3761
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Entry
SPPYR_3761 CDS
T05531
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03410
Base excision repair
sphu03430
Mismatch repair
sphu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPPYR_3761
03430 Mismatch repair
SPPYR_3761
03440 Homologous recombination
SPPYR_3761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphu03400
]
SPPYR_3761
DNA repair and recombination proteins [BR:
sphu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SPPYR_3761
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SPPYR_3761
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPPYR_3761
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF6986
VEK-30
Motif
Other DBs
NCBI-ProteinID:
SBV34876
UniProt:
A0A1Y5Q1V3
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All DBs
Position
SPPYR:3943347..3945113
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AA seq
588 aa
AA seq
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MSDAALGITRSIAGQPWHWRRASADMASENLAPDDLVTQLLLARGVARDDLDRQRAPTLR
GFMPDPSLFRDMDAAAARLADAVEKGEAVTIFGDYDVDGATSAALLVRLLRGLGLPVGAY
IPDRLMEGYGPSGAALVKIGEAGSKLVVTVDCGAQAFDAIAEAKAAGVEVIVVDHHQCAT
TLPAALALVNPNRLDEEADAAIHGNLAAVGVAFLLGAALLRTLRARGFFASRAEPALIEL
LDLVALGTVADVARLTGFNRALVTQGLKVMARRGNIGLAALMDAARLTKPPGASDMGFAL
GPRINAGGRVGKSDLGVRLLTTGDPQEAAEIAAELNRLNEERRAIEAAVLDQAIEASAAC
GNAPVAIVAGEGWHPGVIGIVAGRLKERLHRPAIVIALDEDGVGKGSGRSISGVDLGAAI
LAAKESGLLVAGGGHAMAAGLTVEKDKVDALGAFLSDRLAADVERASGDKSLLIDAVLAP
RGINPLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGADHVRLIVAGDDGACFKAVA
FRSAETELGQALLHARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgcggcgctcggaataacgcgctcgatcgccggccagccctggcattggcgg
cgggcgagcgccgatatggctagcgaaaatctcgcccccgacgatctcgtcacgcaattg
ctgctcgcgcgcggcgtcgcgcgcgacgatctcgaccggcagcgcgcgccgacgctgcgc
ggcttcatgcccgacccgtcgctgttccgcgacatggacgccgccgccgcccggctcgcc
gatgcggtcgagaaaggcgaggccgtcacgatcttcggcgattatgacgtcgacggcgcg
acctcggcggcgctgctcgtgcgattgctgcgcgggctcggcctccccgtcggcgcctat
atccccgaccgcctgatggaaggctatgggccgtcgggcgcggcgctcgtcaagatcggc
gaggcggggtcgaagctcgtcgtcacggtcgactgcggcgcgcaggcgttcgacgcgatc
gccgaggccaaggcggcgggggtcgaggtgatcgtcgtcgatcatcaccaatgcgcgacg
acgctgcccgcggcgctcgcgctcgtgaaccccaaccggctcgacgaggaagccgatgcg
gcgatccacggcaatctcgccgcggtgggggtcgccttcctgctcggcgccgcgctgctc
cgcaccctgcgcgcgcgcggatttttcgcgagccgcgccgagcccgcgctgatcgagctg
ctcgacctcgtcgcgctcggcaccgtcgccgatgtcgcgcgcctcaccggcttcaaccgc
gcgctggtgacgcaggggctgaaggtgatggcgcggcgcggcaatatcggcctcgccgcg
ctgatggacgccgcgcggctcaccaagccgccgggcgcgagcgacatgggctttgcgctc
ggtccgcgaatcaacgccggcgggcgcgtcggcaagtccgacctcggcgtccggctgctc
acgacgggcgacccgcaggaagccgccgagatcgcagccgagctcaaccggctgaacgaa
gagcgccgcgcgatcgaggcggcggtgctcgaccaggcgatcgaggcgagcgccgcctgc
ggcaatgcgccggtcgcgatcgtcgcgggcgagggctggcatccgggcgtgatcggcatc
gtcgccgggcgtctgaaagaaaggctgcatcgccccgctatcgtgatcgcgctcgacgag
gatggcgtcggcaaggggtcggggcgctcgatctcgggcgtcgacctcggcgccgcgatc
ctcgccgcgaaagagtcggggctgctcgtcgcgggcggcggtcatgcgatggcggcgggg
ctgaccgtcgaaaaagacaaggtcgatgcgctcggcgctttcctcagcgatcgtctcgcc
gccgacgtcgagcgcgcgagcggcgacaaatcgctgctgatcgatgcggtgctcgcgccg
cgcgggatcaatccgctctggtgcgacgcgatcgagagcgcgggcccctatggcgccggc
tggcccgcgccgcgcgtcgcgacgggaccggtgcgaatcgtcgaatcggggatcgtcggc
gccgaccatgtccgcctgatcgtggcgggcgacgacggcgcgtgcttcaaggcggtcgcc
ttccgcagcgccgagaccgaattggggcaggccctgctccacgcgcgcggacgcaaatta
tggctcgcgggccgcgcaaaacgcgacgattggggcagccgccccgccgccgaactgcat
ctcgaggatgcggcctgggctgactag
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