KEGG   Uncultured Sphingopyxis sp. UC10: SPPYR_3850
Entry
SPPYR_3850        CDS       T05531                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
sphu  Uncultured Sphingopyxis sp. UC10
Brite
KEGG Orthology (KO) [BR:sphu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sphu03016]
    SPPYR_3850
Enzymes [BR:sphu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     SPPYR_3850
Transfer RNA biogenesis [BR:sphu03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    SPPYR_3850
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2 Beta-prop_Nup120_160
Other DBs
NCBI-ProteinID: SBV34965
UniProt: A0A1Y5Q2C7
LinkDB
Position
SPPYR:4021612..4022229
AA seq 205 aa
MTVHFHEEDLPEGVLRPGPVAIDTETMGLNPLRDRLCLVQISDGSGDEHLVRFKPGSAYD
APVLKAILTDPARLKLFHFARFDIAALQQALGVVTAPVYCTKIASKLVRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAELSDAQRDYAASDVRFLHAMKDVLDARLAREGRTALAQA
CFDFLPTRAALDLAGWPEVDIFAHS
NT seq 618 nt   +upstreamnt  +downstreamnt
atgacagtccatttccacgaagaagacctgcccgagggcgtgctgcgcccgggcccggtc
gcgatcgataccgagaccatgggtctgaacccgctgcgcgaccggctctgcctcgtccag
atcagcgacgggtcgggcgacgagcatctggtgcgcttcaagcccggcagcgcctatgac
gcgccggtgctgaaggcgatcctgaccgatcccgcgcggctgaagctgttccatttcgcg
cgtttcgacatcgcggcgctgcagcaggcgctcggcgtggtgaccgcgcccgtctattgc
accaagatcgcctcgaagctggtgcgcacctataccgatcgccacgggctcaaggaactg
gtgcgcgaactgctcgggcaggaggtgtcgaagcagcagcagtcgagcgactggggcgcc
gccgagctcagcgacgcgcagcgcgactatgcggcgagcgacgtgcgcttcctgcacgcg
atgaaggacgtgctcgacgcgcggctggcgcgcgagggacgcacggcgcttgcgcaggcc
tgtttcgatttcctgccaacgcgcgccgcgctcgaccttgcgggctggcccgaagtcgat
attttcgcgcatagctga

DBGET integrated database retrieval system