Uncultured Sphingopyxis sp. UC10: SPPYR_3850
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Entry
SPPYR_3850 CDS
T05531
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphu03016
]
SPPYR_3850
Enzymes [BR:
sphu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SPPYR_3850
Transfer RNA biogenesis [BR:
sphu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SPPYR_3850
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-ProteinID:
SBV34965
UniProt:
A0A1Y5Q2C7
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All DBs
Position
SPPYR:4021612..4022229
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AA seq
205 aa
AA seq
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MTVHFHEEDLPEGVLRPGPVAIDTETMGLNPLRDRLCLVQISDGSGDEHLVRFKPGSAYD
APVLKAILTDPARLKLFHFARFDIAALQQALGVVTAPVYCTKIASKLVRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAELSDAQRDYAASDVRFLHAMKDVLDARLAREGRTALAQA
CFDFLPTRAALDLAGWPEVDIFAHS
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgacagtccatttccacgaagaagacctgcccgagggcgtgctgcgcccgggcccggtc
gcgatcgataccgagaccatgggtctgaacccgctgcgcgaccggctctgcctcgtccag
atcagcgacgggtcgggcgacgagcatctggtgcgcttcaagcccggcagcgcctatgac
gcgccggtgctgaaggcgatcctgaccgatcccgcgcggctgaagctgttccatttcgcg
cgtttcgacatcgcggcgctgcagcaggcgctcggcgtggtgaccgcgcccgtctattgc
accaagatcgcctcgaagctggtgcgcacctataccgatcgccacgggctcaaggaactg
gtgcgcgaactgctcgggcaggaggtgtcgaagcagcagcagtcgagcgactggggcgcc
gccgagctcagcgacgcgcagcgcgactatgcggcgagcgacgtgcgcttcctgcacgcg
atgaaggacgtgctcgacgcgcggctggcgcgcgagggacgcacggcgcttgcgcaggcc
tgtttcgatttcctgccaacgcgcgccgcgctcgaccttgcgggctggcccgaagtcgat
attttcgcgcatagctga
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