Uncultured Sphingopyxis sp. UC10: SPPYR_3857
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Entry
SPPYR_3857 CDS
T05531
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPPYR_3857 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphu03019
]
SPPYR_3857 (recQ)
03400 DNA repair and recombination proteins [BR:
sphu03400
]
SPPYR_3857 (recQ)
Enzymes [BR:
sphu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPPYR_3857 (recQ)
Messenger RNA biogenesis [BR:
sphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPPYR_3857 (recQ)
DNA repair and recombination proteins [BR:
sphu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPPYR_3857 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
ResIII
Motif
Other DBs
NCBI-ProteinID:
SBV34972
UniProt:
A0A1Y5PY66
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All DBs
Position
SPPYR:4029593..4031368
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AA seq
591 aa
AA seq
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MSADALLPLLKSTFGFDAFRGKQGDVVARVMAGERTLAVMPTGAGKSLTYQLPAVALDGC
VVVVSPLIALMHDQLRGARAAGIRAASLTSVDADFADTRQAYRDGALDLLYIAPERATGE
GFRALMEARSPALFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPSVPRLALTATADKHTR
EDILLQLGIPAEGLVLAGFDRPNIRYRVTPRVSPAKQLTDFIAANPGPGIVYCPTRDGTE
RMAEKLAAATGRSVAAYHAGLDPERRARVQHDFVASEDGIVTATVAFGMGIDKPDVRFVA
HAGLPKSIESYYQETGRAGRDGDPAEALMLWGAEDFARARMRLGELPEGRQASERARLNA
LAALVETVECRRALLLRHFGENPPGRCGNCDTCLEPPKQVDASVLAQKLLSAVYRTGQSF
GAGHVEAVLTGRSDARIESRGHDKLSVFGIVGGEEARLLRPLVRTLVAREALETTEHGGL
MFGPAARAVMKGEVPVLMAEPPVKRTQRASRADRAAANPVGDPLFEALRAMRRELAAEAG
VPPYVIFHDAVLRAMASDRPATRSALADIPGVGGKKLEAWGDAFLNVIRQY
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgacgcgctcctcccgctgctcaagtccaccttcggtttcgacgccttccgc
ggaaagcagggcgacgtcgtcgcgcgggtgatggcgggcgagcgcacgctggcggtgatg
ccgacgggggcgggcaagtcgctgacctatcaattgcccgcggtggcgctcgacggctgc
gtcgtggtcgtgtcgccgctgatcgcgctgatgcacgaccagctgcgcggcgcgcgcgcg
gcggggattcgcgccgcctcgctgaccagcgtcgacgccgatttcgccgacacgcggcag
gcgtatcgcgatggcgcgctcgacctcctctatatcgcgcccgaacgtgccaccggcgaa
ggcttccgcgcgctgatggaggcgcgcagccccgcgctgttcgcgatcgacgaagcgcat
tgcgtcagcgaatgggggcatgatttccggcccgactatcgcttgctccggcctttgctc
gacgcctttccctcggtgccgcggcttgccctgacggcaacggcggacaagcatacgcgc
gaggatattctcctccagctcggcattccggccgagggattggtgctcgcggggttcgac
cggccgaatatccgttaccgggtgacgccgcgcgtgagcccggcgaagcagctcaccgat
ttcatcgccgccaatccggggccggggatcgtctattgcccgacgcgcgacggcaccgag
cggatggcggaaaagctcgccgcggcaacggggcgcagcgttgccgcctatcacgccggg
ctcgatcccgagcggcgcgcgcgggtgcagcacgacttcgtcgcgtcggaggacggcatc
gtcaccgcgacggtcgccttcggcatggggatcgacaagcccgacgtgcgcttcgtcgcg
catgccgggctgccgaagtcgatcgagagctattatcaggagacggggcgtgcggggcgc
gacggcgaccccgccgaggcgctgatgctgtggggcgcggaggatttcgcgcgcgcgcgg
atgcggctcggcgagctgcccgagggccggcaagcgagcgaacgcgcgcggctcaacgcg
ctcgcggcgctggtcgagacggtcgagtgccgccgcgccttgctgctgcggcatttcggg
gaaaacccgcccggacgctgcggcaattgcgacacctgcctcgaaccgccgaagcaggtc
gatgcgagcgtgctggcgcagaaattgctgagcgcggtctatcgcaccgggcagagcttc
ggcgccgggcatgtcgaggcggtgctgacggggcggagcgacgcgcgcatcgaaagccgc
ggccacgacaaattgtcggtgttcgggatcgtcgggggcgaggaggcgcggctgctccgg
ccgctcgtccgcacgctcgtcgcgcgcgaggcgctcgagacgaccgagcatggcgggctg
atgttcggtcccgcggcgcgcgcggtgatgaagggcgaggtgccggtgctgatggccgag
ccgcccgtgaagcggacgcagcgggcgagtcgcgccgatcgcgcggcggcgaacccggtc
ggcgatccgctgttcgaggcgctgcgcgcgatgcggcgcgagcttgcggccgaggccggg
gtgccgccctatgtgatcttccacgacgcggtgctgcgcgcgatggcgagcgaccggccc
gcgacgcgaagcgcgctcgcggatattccgggcgttggcggcaagaagctcgaggcgtgg
ggcgatgcgtttctgaacgtgatccggcagtattga
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