Streptomyces phaeolivaceus: F9278_14115
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Entry
F9278_14115 CDS
T07107
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphv
Streptomyces phaeolivaceus
Pathway
sphv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9278_14115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphv03019
]
F9278_14115
03009 Ribosome biogenesis [BR:
sphv03009
]
F9278_14115
Enzymes [BR:
sphv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F9278_14115
Messenger RNA biogenesis [BR:
sphv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9278_14115
Ribosome biogenesis [BR:
sphv03009
]
Prokaryotic type
rRNA processing factors
F9278_14115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QFQ97156
UniProt:
A0A5P8K281
LinkDB
All DBs
Position
complement(3027730..3031851)
Genome browser
AA seq
1373 aa
AA seq
DB search
MPESIEPAEPAQGSDHNTPSDTLPPRRRRRAASRPAGPPSAASEAAAETTAPAIPAADSE
DLAAAEETAEVAEAIAADEAAVTAEADVDEEAAEVEEVAPAGRTRRRATRRASAPAGAPK
EAEAVEVVETVAPVAAVTESAETPAAEVEEPAPAGRTRRRATRRASAPTGAPKAAEESAV
EAAPETGAVTTAPAEAPAAVEEVAPAGRTRRRATRRVSAPAGEPVAAEVVEAPAEAVEAP
APVAVPEPAEEAAEEAAPKGRTRRRATRRVTTPAGAPEGEAAASVAAESAAPQTVQAAVA
EAPAAETVPAQAAQESPAAEAEDAGPRRARRRTTRKAAGGFSAPAAPVAEDAPSRPSRPA
VAVFQAPVFTEPMFQTPERAAAQAAAEARAETPVEVEEPAEAAATTDLGGFAEEENTGGS
RRRRRRRGEPAEAEPPVAATVVADEPEEPEESEESEDTAEGDEYGEEESTGSRRRRRRGG
RRRRRGESADADDAAEGDELAAEQAAQDAEDTAEQVDEDAEDEADEREDSGSGSSSSRRR
RRRRRRAGDSGGDAESTPDDPERTVVKVREPRERRAKETEFSDEVQSIKGSTRLEAKKQR
RREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQA
TSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSG
QSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKI
VPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKARNGNAPTLLYGEPDMTVRVVR
DIFNEDFSKVIVSGEDAWETIHGYVSHVAPDLADRLTKWTSEVDVFATYRIDEQLMKALD
RKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDL
GGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLES
FSETCVHCNGRGVIVHMDQPTAVGGGGGGGKRRKRGRGGAEHDHEHVTEAVESAESAELV
EAEVAAEVAEPVALPSPEYEPDEELYSSVAEAEAAVGRGRSRRRATRRASAPSGAPKSRE
ALATTVSEDRAPKSREAAEAEPVAVEDPVVEAPAAAPVAEEAAPKGRTRRRATRKVSAPA
GAPAGAAADDAVVTVVEPVAEPVAEPVVEKAAEPVAEPVAESVVEPEAAAAESAAPARPR
RRAVRKATAPTASAEAAVVVVPSAPVEEAAPAAGETGEAEAEAEAPAKKTAARKTAKKAT
AKKAATKKTAAAKKTVAKKATAKKTATKKAATKKTTVAAEQSSATVTASTDES
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatcgatcgaacccgccgagcccgcgcagggctccgaccacaacacgccgagc
gacaccctgccgccgcgccgtcgccgccgtgccgcgtcccgccccgcgggacccccctcc
gccgcctccgaagcggccgcggagaccaccgcgccggccataccggccgccgattccgag
gacctcgcggcagccgaggagaccgccgaggtggccgaggccatcgcggccgacgaggcc
gccgtgaccgctgaggcggacgtggacgaggaagccgccgaggtcgaagaggtcgcgccc
gctggtcgtacgcgccgtcgtgcgacccgtcgcgcctccgcgcccgccggtgcgcccaag
gaagccgaggccgtcgaggtcgtcgagacggtggccccggtcgccgccgtgaccgagagc
gccgagacccccgccgccgaggtagaggagcccgcgcccgccggtcgtacgcgccgtcgt
gcgacccgtcgcgcctccgcgcccaccggtgcgcccaaggccgccgaggagagtgccgtc
gaggccgcgcccgagaccggcgccgtgaccaccgccccggccgaggcacccgccgctgtc
gaggaggtcgcgcccgccggtcgtacgcgccgtcgtgccacgcggcgggtgtccgcgccc
gccggtgagcccgtggccgccgaggtcgtggaggctccggcggaggccgtggaagccccc
gcccccgtcgccgttccggagcccgcggaggaggcggccgaggaggccgcgcccaagggc
cgtacacgccgccgggccacccgccgggtgaccacccccgccggtgcgcccgagggtgag
gcggctgcgtccgtcgcggccgagagcgccgcgccgcagacggtgcaggctgccgtcgcc
gaggcccccgccgccgagaccgttccggcccaggccgcgcaggagtcccccgccgccgag
gccgaggacgccgggccgcgccgggcccgtcgccggaccacgcgcaaggccgccggtggg
ttctcggcgcctgccgcgcccgtcgcggaggacgcgccgtcgcggccgtcgcggcccgcc
gtggccgtgttccaggcgccggtgttcaccgagccgatgttccagacgccggagcgggcc
gccgcgcaggccgccgccgaggcacgggccgagaccccggtggaggtcgaggagcccgcg
gaggccgccgcgaccaccgacctcggcgggttcgccgaggaggagaacaccggcggatcg
cgtcgccgtcgccgtcgccggggtgagcccgccgaggcggagccgcccgtggccgccacc
gtggtggccgacgagccggaggagcccgaggagtccgaggagtcggaggacaccgccgag
ggcgacgagtacggcgaggaggagtccaccgggtcgcgccgccgtcgccgtcgtggtggc
cgccgccgtcgccgcggcgagtcggccgacgccgacgacgccgccgagggtgacgaactc
gccgccgaacaggccgcgcaggacgccgaggacaccgccgagcaggtggacgaggacgcc
gaggacgaggccgacgagcgcgaggactccggttccggctccagcagcagccgccgtcgc
cgtcgccgccgccggcgcgccggggactccgggggcgacgccgagtcgacgcccgacgac
cccgagcgcacggtcgtcaaggtccgtgagccgcgcgagcggcgcgccaaggagaccgag
ttctccgacgaggtgcagtccatcaagggctcgacccgtctggaggccaagaagcagcgc
cgacgcgaaggccgcgagcaggggcgccgtcgcgtcccgatcatcaccgaggccgagttc
ctcgcccgccgcgaggccgtcgagcgcgtcatggtcgtccgccagagcggcgagcgcacc
cagatcggcgtcctcgaggacaacgtgctcgtcgagcactacgtcaacaaggagcaggcg
acctcgtacgtcggcaacgtctacctcggcaaggtgcagaacgtgctgccgtcgatggag
gccgccttcatcgacatcggcaagggccgcaacgccgtcctgtacgccggcgaggtcaac
ttcgaggcgctcggcatggccaacgggccgcgccgtatcgagtccgccctgaagtccggt
cagtccgtgctcgtccaggtcaccaaggacccgatcgggcacaagggcgcgcgtctgacg
agccaggtctccctgcccggccggtatctggtctacgtccccgaggggtcgatgaccggg
atcagccgcaagctgcccgacaccgagcgggcccggctgaagaccatcctcaagaagatc
gtccccgaggacgcgggcgtcatcgtgcgcaccgcggccgagggcgcgagcgaggacgag
ctgcgccgcgacgtcgagcggctgcaggcgcagtgggaggacatccagaagaaggccagg
aacggcaacgcgccgacgctgctgtacggcgagccggacatgaccgtccgggtcgtccgc
gacatcttcaacgaggacttctccaaggtcatcgtgagcggcgaggacgcctgggagacc
atccacggatatgtctcgcacgtcgcgcccgacctggccgaccgactgacgaagtggacc
tccgaggtcgacgtcttcgcgacgtaccgcatcgacgagcagctgatgaaggcgctggac
cgcaaggtgtggctgccgagcggtggttcgctggtgatcgacaagaccgaggccatgatc
gtggtcgacgtcaacaccggtaagttcaccggccagggcggcaacctggaggagacggtc
accaggaacaacctggaggcggccgaggagatcgtgcgtcagctgcggctgcgcgacctc
ggcggcatcgtcgtcatcgacttcatcgacatggtcctggagtccaaccgggacctggtg
ctgcggcgcctgctggagtgcctgggccgcgaccgtacgaagcaccaggtcgccgaggtc
acctcgttgggcctggtccagatgacccgcaagcgcgtcgggcagggcctgctggagtcg
ttctccgagacctgtgtccactgcaacgggcgcggcgtgatcgtgcacatggaccagccg
acggccgtcggcggtggcggtggtggcggcaagcgccgcaagcgcgggcgtggcggtgcc
gagcacgaccacgagcacgtcaccgaggccgtcgagtcggcggagtcggccgagctggtc
gaggccgaggtggccgccgaggtcgccgagcccgtggcgctgccctcgccggagtacgag
cccgacgaggagctgtacagcagcgtcgccgaggccgaggcggcggtcgggcgcggccgt
tcgcggcgccgtgcgacccggcgggcgtccgcgccctcgggtgcgccgaagtcccgtgag
gccctggccaccaccgtctccgaggaccgtgccccgaagtcgcgggaggccgccgaggcg
gagcccgtcgcggtggaggacccggtcgtcgaggcgccggccgccgcgccggtcgccgag
gaggccgcgccgaagggccgtacgcgtcggcgggcgacccggaaggtgtccgccccggcg
ggcgcgccggccggtgccgccgcggacgacgccgtggtgacggtcgtcgagccggtcgcg
gagcccgtggccgagccggtcgtcgagaaggccgccgaaccggtcgccgagcccgtggcc
gagtcggtcgtggagcccgaggcggctgccgccgagagcgcggctccggcccgtcctcgt
cggcgtgccgtgcgcaaggcgacggcgcccaccgcgtccgccgaggcggccgtggtcgtg
gttccctccgcaccggtcgaggaggccgctccggcggccggggagaccggggaggccgag
gccgaggccgaggcgcccgccaagaagacggcggcgcgcaagacggccaagaaggccacc
gcgaagaaggccgccacgaagaagacggcggctgccaagaagacggtcgccaagaaggcc
acggccaagaagacggcgacgaagaaggccgccacgaagaagaccacggtggccgccgag
cagtcgtcggccacggtcaccgcgtcgaccgacgagagctga
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