Streptomyces phaeolivaceus: F9278_29575
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Entry
F9278_29575 CDS
T07107
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphv
Streptomyces phaeolivaceus
Brite
KEGG Orthology (KO) [BR:
sphv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphv03016
]
F9278_29575
Enzymes [BR:
sphv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F9278_29575
Transfer RNA biogenesis [BR:
sphv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F9278_29575
Prokaryotic type
tRNA splicing ligases
F9278_29575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFQ99616
UniProt:
A0A5P8K9D3
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All DBs
Position
6375593..6376786
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPASVEEGALRQLRNVATLPWIEGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSRIEQAIPVGRGMHGDPIDPG
QLHGFAVGGWDGFWGRFDGVADSVKFRHDRAEKQMGTLGGGNHFIEICTDSTGSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQDLIDRDLAVFVSDTPQMAAYRNDLFWAQEYAKYNR
SIMMALLKDVVRKEFKKAKPAFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRTAAKRHFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgagatgccgggcgcgaaggtacccatccggatgtggaccgaccccgcg
tcggtcgaggagggggcgctgcggcagctccgcaacgtcgccaccctcccctggatcgag
ggcctcgccgtgatgccggacgtgcattacgggaagggggcgacggtcgggtccgtcatc
gccatgcggggggccgtgtgtccggcggcggtgggggtcgacatcggctgcggaatgtcc
gcggtgaagacgtccctgacggccaacgacctgcccggggacctctcccggctgcggtcg
aggatcgagcaggcgattccggtgggacgggggatgcacggcgaccccatcgacccggga
caactgcacggcttcgcggtcggggggtgggacgggttctgggggcggttcgacggggtc
gcggattcggtcaagttccgtcacgaccgggcggagaagcagatgggaacgctcggcgga
ggaaatcattttattgagatctgcacggattcgaccggttctgtctggctgatgctgcat
tccggctcccggaacatcggcaaggagctggcggagcatcacatcggcatcgcccagaag
ctcccgcacaaccaggacctgatcgaccgtgatctcgccgtcttcgtctcggacaccccg
cagatggcggcgtaccgcaacgatctgttctgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcgctcctcaaggacgtcgtccgcaaggagttcaagaaggcgaagccg
gccttcgagcccgagatcagcgctcaccacaactatgtggccgaggagcgctacgacggc
atggacctcctggtgacccgtaagggcgcgatccgcgcgggctccggcgagtacgggatc
atcccgggctccatgggcaccggttcgtacatcgtgaaggggctcggcaacgagaaagcc
ttcaactcggcgtcccacggcgccggtcggcggatgagccggacggcggcgaagcggcac
ttctcgacgaaggacctggaggagcagacacggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccgggcgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gacctggtcgaggtggtggcgaagctgaagcaggtcgtgtgcgtgaagggctga
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