Streptomyces phaeolivaceus: F9278_33000
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Entry
F9278_33000 CDS
T07107
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphv
Streptomyces phaeolivaceus
Pathway
sphv03420
Nucleotide excision repair
sphv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F9278_33000
03430 Mismatch repair
F9278_33000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphv03400
]
F9278_33000
Enzymes [BR:
sphv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9278_33000
DNA repair and recombination proteins [BR:
sphv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9278_33000
MMR (mismatch excision repair)
Other MMR factors
F9278_33000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QFR00187
UniProt:
A0A5P8KB18
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All DBs
Position
7117632..7121123
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AA seq
1163 aa
AA seq
DB search
MSAPISDPEQLKELLGIPFTPEQTACVVAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAGELAERVRKALVRAGITDPDVIDPDNPPGEPVISTYHAFAGRLL
TDHGLRIGLEPSSRLLADATRYQLAARVLRESPGPYPALTRSFPDLVSDILTLDSELAEH
LVRPEDLRAYDAGLLRELEGAKLTNADLRKVPEAAAARRELTELVGRYRAAKRERNLLDF
GDQIALSAGLARLPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFGGGTGHPVTAVGD
PCQAIYGWRGASVANLDDFPEHFAHPDGRPATRQSLSENRRSGGRLLDLANGLAEPLRAM
HAGVEALRPAPGAERAGVVRCALLNTHAEELDWIADSIAHLVRTGKEPGEIAVLCRTAGD
FAEIQGALVARDIPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIG
PRDLALLGRRARLLVSHARVDGDDDPDRRLAAAVEGVDPSEVISLADALDTFLELPLEAE
REDDGLPFSPDARVRFARLAAELRDLRRSLADPLMDVLHRVLAATGLEVELSASPHALAA
RRRETLSNFLDIAASFAANSAGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAH
KSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHELRGDADTLPDVEAWDSRGLKA
FQEAMKDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSDFLMALHDHCVAGH
GEIEAWADEPEEEAENPALREAAADHAWPLPLDGAALMRRRAAAATVLAHLETASSHEDA
HPGAAEEDAQEAPDDIPLEPFEPFEEDSGDEEEDTGDWDSWSSDRPAPGLHARVEDAENT
VRDRHTPTVPRARRHPATSGLSPEEARTVASWDRDLDALAGELVRARTKVTDVPLPASLT
ASQVMRLAADPDAFAQELARPMPRPPQPGARRGTRFHAWVEARFEELRLPMLEPDELPGG
EAEIADEQDLEALKEAFDRTPYAHRTPHRVEAPFQLGIAGRVVRGRIDAVYRESDGDGTT
RYEIVDWKTSRTRTADPLQLAVYRLAWAEQHGVPLESVGAAFLYVRTGDVVRPTNLPDRV
ALERLLLEEPDGGRPDSTGEGRE
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccctatcagcgatcccgagcagctcaaggagctcctcggcatcccgttcacc
ccggagcagacggcctgcgtcgtcgcgccgcccgccccgcaggtgatcgtggcgggagcc
gggtcgggcaagaccacggtgatggccgcgcgcgtggtgtggctggtcggcaccggacag
gtcgcccccgaacaggtgctcggcctgaccttcaccaacaaggcggcgggcgaactcgcc
gagcgtgtgcgcaaggccctggtcagggccggcatcaccgaccccgacgtgatcgacccg
gacaacccgccgggcgagccggtcatctccacctaccacgccttcgcgggccgcctcctg
accgaccacggcctgcgcatcggcctggaacccagctcccggctcctcgccgacgccacc
cgctaccagctcgccgcccgcgtcctgcgcgagtccccgggcccgtacccggcgctgacc
cgctccttcccggacctggtcagcgacatcctgaccctcgactccgaactcgccgagcac
ctcgtacgccctgaggacctgcgcgcgtacgacgccggactgctgcgcgagctggagggc
gccaagctcaccaacgcggacctccgcaaggtccccgaggccgccgccgcccggcgcgaa
ctcaccgaactggtgggccgctaccgcgcggccaagcgcgagcggaacctcctcgacttc
ggcgaccagatcgccctgtcggccggcctcgcgcggctccccgaggtggggcgcgtcctg
cgggacgagttccgggtggtcctgctcgacgagtaccaggacacctcggtggcccaacgc
gtgctgctggcgggcctgttcggcggcggcaccggccacccggtgaccgccgtcggtgac
ccctgccaggccatctacggctggcgcggcgcctccgtcgccaacctcgacgacttcccc
gagcacttcgcccaccccgacggccgccccgcgacccggcagtcgctcagcgagaaccgc
cgcagcggcggccgtctcctggacctcgccaacggcctcgcggagcccctgcgggccatg
cacgcgggcgtggaggccctccggcccgccccgggcgccgaacgcgccggagtggtccgc
tgcgccctgctgaacacccacgccgaggaactggactggatcgccgactcgatcgcccac
ctcgtgcgcaccggcaaggaacccggcgagatcgccgtcctgtgccgtacggccggagac
ttcgccgagatccagggcgccctggtcgcccgtgacatcccggtggaggtcgtcggcctc
tccgggctgctccacctgcccgaggtcgccgatctcgtcgccgtctgcgaggtcctccag
gaccccggcgccaatgcctccctcgtccgcctcctcaccggcccgcgctggcggatcggc
ccccgtgatctcgccctcctggggcgccgggcaaggctgctggtgtcccacgcgcgcgtg
gacggcgacgacgacccggaccgccggctcgccgcggccgtggagggcgtcgacccgtcc
gaggtgatctcgctggcggacgcgctggacacgttcctggaactgccactcgaagccgag
cgggaggacgacgggctgccgttctcaccggacgcgcgcgtgcggttcgcccggctcgcc
gccgaactgcgcgacctgcgccgctcgctggccgatccgctcatggacgtcctccaccgc
gtcctcgccgccaccggcctggaggtggaactctccgcgtccccgcacgcgctcgccgcc
cgccgccgcgagaccctgtccaacttcctggacatcgccgcctccttcgccgccaacagc
gcaggcgaggccaccctgctcgccttcctcggcttcctgcgtacggccgcccagtacgag
aagggcctcgacaacgccctgccgggcggagagaacaccgtcaaggtgctcaccgcccac
aagtccaagggactggaatgggacgtcgtcgccgtccccggcctggtcaccggcaccttc
cccagcacccagggacgcgagaagtggaccgcacagggcaaggtcctgccgcacgaactg
cgcggcgacgccgacacccttcccgacgtcgaggcctgggactcccgcggcctcaaagcc
ttccaggaggccatgaaggaccaccagcacaccgaggaactccgcctcggctacgtcacc
ttcacccgcccccgctccctgctcctcggctccggccactggtggggcccctcgcagaaa
cgcccgcgcggtccgtccgacttcctcatggccctccacgaccactgcgtcgccggacac
ggcgagatcgaggcatgggccgacgaacccgaggaggaggccgagaaccccgccctccga
gaggccgccgccgaccacgcctggcccctcccgctcgacggcgcggccctgatgcgccgc
cgcgccgccgccgcgaccgtactggcccatctggagacggcgtcgtcccacgaggacgcg
catccgggcgccgccgaggaggacgcccaggaggccccggacgacattcccttggagccc
ttcgagcccttcgaggaggactccggtgacgaggaggaggacaccggcgactgggactcc
tggtcgtctgaccgccccgcaccgggcctccacgcgcgcgtggaggacgcggagaacacc
gtccgggacaggcacacgccgaccgtcccacgcgcgcgcaggcaccccgccacgtccggt
ctcagccccgaggaggcacgcaccgtcgcctcctgggaccgcgacctggacgccctcgcc
ggggaactcgtgcgggcccgcacgaaggtcaccgacgtacccctgccggcctcgctgacc
gcctcgcaggtgatgcgtctggccgccgatccggacgcgttcgcacaggaactcgcgcgc
cccatgccccgccctccgcagcccggggcacgtcgtggcacccgattccacgcctgggtc
gaggcccgcttcgaagagctgcggctgcccatgctggagcccgacgagctgcccggcggc
gaggccgagatcgccgacgagcaggacctggaggccctcaaggaggccttcgaccgcact
ccgtacgcacaccgcacgccccaccgggtcgaggcaccgttccaactcggcatcgccgga
cgcgtcgtacgtggccgtatcgacgccgtctaccgggagagcgacggcgacgggacgacg
aggtacgagatcgtcgactggaagaccagccgcacccgcaccgccgacccgctccagctc
gccgtctaccggctcgcctgggccgagcagcacggcgtgcccctggagtccgtcggagcg
gccttcctgtacgtccgcacaggggacgtcgtacggcccacgaacctccccgaccgggtc
gcactggagcggttgctcctggaggagcccgacggcgggagaccggactcgaccggagag
ggacgggaatag
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